Articles | Volume 19, issue 5
https://doi.org/10.5194/cp-19-1043-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Special issue:
https://doi.org/10.5194/cp-19-1043-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
30 May 2023
Research article |
| 30 May 2023
| 30 May 2023
Refining data–data and data–model vegetation comparisons using the Earth mover's distance (EMD)
Institute of Geosciences, Sect. Meteorology, Rheinische
Friedrich-Wilhelms-Universität Bonn, Germany
Institute of Earth Surface Dynamics, Géopolis, University of Lausanne, Lausanne, Switzerland
Anne Dallmeyer
Max Planck Institute for Meteorology, Bundesstraße 53, 20146 Hamburg, Germany
Nils Weitzel
Department of Geosciences, University of Tübingen, Schnarrenbergstr. 94–96, 72076 Tübingen, Germany
Institute of Environmental Physics, Heidelberg University, Im Neuenheimer Feld 229, 69120 Heidelberg, Germany
Chenzhi Li
Polar Terrestrial Environmental Systems, Alfred Wegener Institute
Helmholtz Centre for Polar and Marine Research, Telegrafenberg A45, 14473
Potsdam, Germany
Institute of Environmental Science and Geography, University of Potsdam, Karl-Liebknecht-Str. 24–25, 14476 Potsdam, Germany
Jean-Philippe Baudouin
Department of Geosciences, University of Tübingen, Schnarrenbergstr. 94–96, 72076 Tübingen, Germany
Institute of Environmental Physics, Heidelberg University, Im Neuenheimer Feld 229, 69120 Heidelberg, Germany
Ulrike Herzschuh
Polar Terrestrial Environmental Systems, Alfred Wegener Institute
Helmholtz Centre for Polar and Marine Research, Telegrafenberg A45, 14473
Potsdam, Germany
Institute of Environmental Science and Geography, University of Potsdam, Karl-Liebknecht-Str. 24–25, 14476 Potsdam, Germany
Institute of Biochemistry and Biology, University of Potsdam,
Karl-Liebknecht-Str. 24–25, 14476 Potsdam, Germany
Xianyong Cao
Alpine Paleoecology and Human Adaptation Group (ALPHA), State Key
Laboratory of Tibetan Plateau Earth System, Resources and Environment
(TPESRE), Institute of Tibetan Plateau Research, Chinese Academy of Sciences, 100101 Beijing, China
Andreas Hense
Institute of Geosciences, Sect. Meteorology, Rheinische
Friedrich-Wilhelms-Universität Bonn, Germany
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Earth Syst. Sci. Data, 16, 731–742, https://doi.org/10.5194/essd-16-731-2024, https://doi.org/10.5194/essd-16-731-2024, 2024
Short summary
Short summary
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Anne Dallmeyer, Anneli Poska, Laurent Marquer, Andrea Seim, and Marie-José Gaillard
Clim. Past, 19, 1531–1557, https://doi.org/10.5194/cp-19-1531-2023, https://doi.org/10.5194/cp-19-1531-2023, 2023
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Ulrike Herzschuh, Thomas Böhmer, Manuel Chevalier, Raphaël Hébert, Anne Dallmeyer, Chenzhi Li, Xianyong Cao, Odile Peyron, Larisa Nazarova, Elena Y. Novenko, Jungjae Park, Natalia A. Rudaya, Frank Schlütz, Lyudmila S. Shumilovskikh, Pavel E. Tarasov, Yongbo Wang, Ruilin Wen, Qinghai Xu, and Zhuo Zheng
Clim. Past, 19, 1481–1506, https://doi.org/10.5194/cp-19-1481-2023, https://doi.org/10.5194/cp-19-1481-2023, 2023
Short summary
Short summary
A mismatch between model- and proxy-based Holocene climate change may partially originate from the poor spatial coverage of climate reconstructions. Here we investigate quantitative reconstructions of mean annual temperature and annual precipitation from 1908 pollen records in the Northern Hemisphere. Trends show strong latitudinal patterns and differ between (sub-)continents. Our work contributes to a better understanding of the global mean.
Ulrike Herzschuh, Thomas Böhmer, Chenzhi Li, Manuel Chevalier, Raphaël Hébert, Anne Dallmeyer, Xianyong Cao, Nancy H. Bigelow, Larisa Nazarova, Elena Y. Novenko, Jungjae Park, Odile Peyron, Natalia A. Rudaya, Frank Schlütz, Lyudmila S. Shumilovskikh, Pavel E. Tarasov, Yongbo Wang, Ruilin Wen, Qinghai Xu, and Zhuo Zheng
Earth Syst. Sci. Data, 15, 2235–2258, https://doi.org/10.5194/essd-15-2235-2023, https://doi.org/10.5194/essd-15-2235-2023, 2023
Short summary
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Climate reconstruction from proxy data can help evaluate climate models. We present pollen-based reconstructions of mean July temperature, mean annual temperature, and annual precipitation from 2594 pollen records from the Northern Hemisphere, using three reconstruction methods (WA-PLS, WA-PLS_tailored, and MAT). Since no global or hemispheric synthesis of quantitative precipitation changes are available for the Holocene so far, this dataset will be of great value to the geoscientific community.
Boris K. Biskaborn, Amy Forster, Gregor Pfalz, Lyudmila A. Pestryakova, Kathleen Stoof-Leichsenring, Jens Strauss, Tim Kröger, and Ulrike Herzschuh
Biogeosciences, 20, 1691–1712, https://doi.org/10.5194/bg-20-1691-2023, https://doi.org/10.5194/bg-20-1691-2023, 2023
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Lake sediment from the Russian Arctic was studied for microalgae and organic matter chemistry dated back to the last glacial 28 000 years. Species and chemistry responded to environmental changes such as the Younger Dryas cold event and the Holocene thermal maximum. Organic carbon accumulation correlated with rates of microalgae deposition only during warm episodes but not during the cold glacial.
Furong Li, Marie-José Gaillard, Xianyong Cao, Ulrike Herzschuh, Shinya Sugita, Jian Ni, Yan Zhao, Chengbang An, Xiaozhong Huang, Yu Li, Hongyan Liu, Aizhi Sun, and Yifeng Yao
Earth Syst. Sci. Data, 15, 95–112, https://doi.org/10.5194/essd-15-95-2023, https://doi.org/10.5194/essd-15-95-2023, 2023
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The objective of this study is present the first gridded and temporally continuous quantitative plant-cover reconstruction for temperate and northern subtropical China over the last 12 millennia. The reconstructions are based on 94 pollen records and include estimates for 27 plant taxa, 10 plant functional types, and 3 land-cover types. The dataset is suitable for palaeoclimate modelling and the evaluation of simulated past vegetation cover and anthropogenic land-cover change from models.
Timon Miesner, Ulrike Herzschuh, Luidmila A. Pestryakova, Mareike Wieczorek, Evgenii S. Zakharov, Alexei I. Kolmogorov, Paraskovya V. Davydova, and Stefan Kruse
Earth Syst. Sci. Data, 14, 5695–5716, https://doi.org/10.5194/essd-14-5695-2022, https://doi.org/10.5194/essd-14-5695-2022, 2022
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We present data which were collected on expeditions to the northeast of the Russian Federation. One table describes the 226 locations we visited during those expeditions, and the other describes 40 289 trees which we recorded at these locations. We found out that important information on the forest cannot be predicted precisely from satellites. Thus, for anyone interested in distant forests, it is important to go to there and take measurements or use data (as presented here).
Femke van Geffen, Birgit Heim, Frederic Brieger, Rongwei Geng, Iuliia A. Shevtsova, Luise Schulte, Simone M. Stuenzi, Nadine Bernhardt, Elena I. Troeva, Luidmila A. Pestryakova, Evgenii S. Zakharov, Bringfried Pflug, Ulrike Herzschuh, and Stefan Kruse
Earth Syst. Sci. Data, 14, 4967–4994, https://doi.org/10.5194/essd-14-4967-2022, https://doi.org/10.5194/essd-14-4967-2022, 2022
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SiDroForest is an attempt to remedy data scarcity regarding vegetation data in the circumpolar region, whilst providing adjusted and labeled data for machine learning and upscaling practices. SiDroForest contains four datasets that include SfM point clouds, individually labeled trees, synthetic tree crowns and labeled Sentinel-2 patches that provide insights into the vegetation composition and forest structure of two important vegetation transition zones in Siberia, Russia.
Nannan Wang, Lina Liu, Xiaohuan Hou, Yanrong Zhang, Haicheng Wei, and Xianyong Cao
Clim. Past, 18, 2381–2399, https://doi.org/10.5194/cp-18-2381-2022, https://doi.org/10.5194/cp-18-2381-2022, 2022
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We reconstructed the vegetation and climate change since the last 14.2 ka BP from a fossil pollen record together with multiple proxies (grain size, contents of total organic carbon and total nitrogen) on the northeast Tibetan Plateau. The results reveal that an arid climate occurs in the early Holocene and the vegetation could be disturbed by human activities to some extent after ca. 0.24 ka BP (1710 CE).
Ulrike Herzschuh, Chenzhi Li, Thomas Böhmer, Alexander K. Postl, Birgit Heim, Andrei A. Andreev, Xianyong Cao, Mareike Wieczorek, and Jian Ni
Earth Syst. Sci. Data, 14, 3213–3227, https://doi.org/10.5194/essd-14-3213-2022, https://doi.org/10.5194/essd-14-3213-2022, 2022
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Pollen preserved in environmental archives such as lake sediments and bogs are extensively used for reconstructions of past vegetation and climate. Here we present LegacyPollen 1.0, a dataset of 2831 fossil pollen records from all over the globe that were collected from publicly available databases. We harmonized the names of the pollen taxa so that all datasets can be jointly investigated. LegacyPollen 1.0 is available as an open-access dataset.
Ramesh Glückler, Rongwei Geng, Lennart Grimm, Izabella Baisheva, Ulrike Herzschuh, Kathleen R. Stoof-Leichsenring, Stefan Kruse, Andrei Andreev, Luidmila Pestryakova, and Elisabeth Dietze
EGUsphere, https://doi.org/10.5194/egusphere-2022-395, https://doi.org/10.5194/egusphere-2022-395, 2022
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Despite rapidly intensifying wildfire seasons in Siberian boreal forests, little is known about long-term relationships between changes in vegetation and shifts in wildfire activity. Using lake sediment proxies, we reconstruct such environmental changes over the past 10,800 years in Central Yakutia. We find that a more open forest may facilitate increased amounts of vegetation burning. The present-day dense larch forest might yet be mediating the current climate-driven wildfire intensification.
Manuel Chevalier
Clim. Past, 18, 821–844, https://doi.org/10.5194/cp-18-821-2022, https://doi.org/10.5194/cp-18-821-2022, 2022
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This paper introduces a new R package to perform quantitative climate reconstructions from palaeoecological datasets. The package includes calibration data for several commonly used terrestrial (e.g. pollen) and marine (e.g. foraminifers) climate proxies to enable its use in various environments globally. In addition, the built-in graphical diagnostic tools simplify the evaluation and interpretations of the results. No coding skills are required to use crestr.
Chenzhi Li, Alexander K. Postl, Thomas Böhmer, Xianyong Cao, Andrew M. Dolman, and Ulrike Herzschuh
Earth Syst. Sci. Data, 14, 1331–1343, https://doi.org/10.5194/essd-14-1331-2022, https://doi.org/10.5194/essd-14-1331-2022, 2022
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Here we present a global chronology framework of 2831 palynological records, including globally harmonized chronologies covering up to 273 000 years. A comparison with the original chronologies reveals a major improvement according to our assessment. Our chronology framework and revised chronologies will interest a broad geoscientific community, as it provides the opportunity to make use in synthesis studies of, for example, pollen-based vegetation and climate change.
Stefan Kruse, Simone M. Stuenzi, Julia Boike, Moritz Langer, Josias Gloy, and Ulrike Herzschuh
Geosci. Model Dev., 15, 2395–2422, https://doi.org/10.5194/gmd-15-2395-2022, https://doi.org/10.5194/gmd-15-2395-2022, 2022
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We coupled established models for boreal forest (LAVESI) and permafrost dynamics (CryoGrid) in Siberia to investigate interactions of the diverse vegetation layer with permafrost soils. Our tests showed improved active layer depth estimations and newly included species growth according to their species-specific limits. We conclude that the new model system can be applied to simulate boreal forest dynamics and transitions under global warming and disturbances, expanding our knowledge.
Jean-Philippe Baudouin, Michael Herzog, and Cameron A. Petrie
Weather Clim. Dynam., 2, 1187–1207, https://doi.org/10.5194/wcd-2-1187-2021, https://doi.org/10.5194/wcd-2-1187-2021, 2021
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Western disturbances are mid-latitude, high-altitude, low-pressure areas that bring orographic precipitation into the Upper Indus Basin. Using statistical tools, we show that the interaction between western disturbances and relief explains the near-surface, cross-barrier wind activity. We also reveal the existence of a moisture pathway from the nearby seas. Overall, we offer a conceptual framework for western-disturbance activity, particularly in terms of precipitation.
Anne Dallmeyer, Martin Claussen, Stephan J. Lorenz, Michael Sigl, Matthew Toohey, and Ulrike Herzschuh
Clim. Past, 17, 2481–2513, https://doi.org/10.5194/cp-17-2481-2021, https://doi.org/10.5194/cp-17-2481-2021, 2021
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Using the comprehensive Earth system model, MPI-ESM1.2, we explore the global Holocene vegetation changes and interpret them in terms of the Holocene climate change. The model results reveal that most of the Holocene vegetation transitions seen outside the high northern latitudes can be attributed to modifications in the intensity of the global summer monsoons.
Stuart A. Vyse, Ulrike Herzschuh, Gregor Pfalz, Lyudmila A. Pestryakova, Bernhard Diekmann, Norbert Nowaczyk, and Boris K. Biskaborn
Biogeosciences, 18, 4791–4816, https://doi.org/10.5194/bg-18-4791-2021, https://doi.org/10.5194/bg-18-4791-2021, 2021
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Lakes act as important stores of organic carbon and inorganic sediment material. This study provides a first investigation into carbon and sediment accumulation and storage within an Arctic glacial lake from Far East Russia. It shows that major shifts are related to palaeoclimate variation that affects the development of the lake and its surrounding catchment. Spatial differences to other lake systems from other regions may reflect variability in processes controlled by latitude and altitude.
Xianyong Cao, Fang Tian, Kai Li, Jian Ni, Xiaoshan Yu, Lina Liu, and Nannan Wang
Earth Syst. Sci. Data, 13, 3525–3537, https://doi.org/10.5194/essd-13-3525-2021, https://doi.org/10.5194/essd-13-3525-2021, 2021
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The Tibetan Plateau is quite remote, and it is difficult to collect samples on it; the previous modern pollen data are located on a nearby road, and there is a large geographic gap in the eastern and central Tibetan Plateau. Our novel pollen data can fill the gap and will be valuable in establishing a complete dataset covering the entire Tibetan Plateau, thus helping us to get a comprehensive understanding. In addition, the dataset can also be used to investigate plant species distribution.
Ramesh Glückler, Ulrike Herzschuh, Stefan Kruse, Andrei Andreev, Stuart Andrew Vyse, Bettina Winkler, Boris K. Biskaborn, Luidmila Pestryakova, and Elisabeth Dietze
Biogeosciences, 18, 4185–4209, https://doi.org/10.5194/bg-18-4185-2021, https://doi.org/10.5194/bg-18-4185-2021, 2021
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Data about past fire activity are very sparse in Siberia. This study presents a first high-resolution record of charcoal particles from lake sediments in boreal eastern Siberia. It indicates that current levels of charcoal accumulation are not unprecedented. While a recent increase in reconstructed fire frequency coincides with rising temperatures and increasing human activity, vegetation composition does not seem to be a major driver behind changes in the fire regime in the past two millennia.
Lydia Stolpmann, Caroline Coch, Anne Morgenstern, Julia Boike, Michael Fritz, Ulrike Herzschuh, Kathleen Stoof-Leichsenring, Yury Dvornikov, Birgit Heim, Josefine Lenz, Amy Larsen, Katey Walter Anthony, Benjamin Jones, Karen Frey, and Guido Grosse
Biogeosciences, 18, 3917–3936, https://doi.org/10.5194/bg-18-3917-2021, https://doi.org/10.5194/bg-18-3917-2021, 2021
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Our new database summarizes DOC concentrations of 2167 water samples from 1833 lakes in permafrost regions across the Arctic to provide insights into linkages between DOC and environment. We found increasing lake DOC concentration with decreasing permafrost extent and higher DOC concentrations in boreal permafrost sites compared to tundra sites. Our study shows that DOC concentration depends on the environmental properties of a lake, especially permafrost extent, ecoregion, and vegetation.
Iuliia Shevtsova, Ulrike Herzschuh, Birgit Heim, Luise Schulte, Simone Stünzi, Luidmila A. Pestryakova, Evgeniy S. Zakharov, and Stefan Kruse
Biogeosciences, 18, 3343–3366, https://doi.org/10.5194/bg-18-3343-2021, https://doi.org/10.5194/bg-18-3343-2021, 2021
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In the light of climate changes in subarctic regions, notable general increase in above-ground biomass for the past 15 years (2000 to 2017) was estimated along a tundra–taiga gradient of central Chukotka (Russian Far East). The greatest increase occurred in the northern taiga in the areas of larch closed-canopy forest expansion with Cajander larch as a main contributor. For the estimations, we used field data (taxa-separated plant biomass, 2018) and upscaled it based on Landsat satellite data.
Simone Maria Stuenzi, Julia Boike, William Cable, Ulrike Herzschuh, Stefan Kruse, Luidmila A. Pestryakova, Thomas Schneider von Deimling, Sebastian Westermann, Evgenii S. Zakharov, and Moritz Langer
Biogeosciences, 18, 343–365, https://doi.org/10.5194/bg-18-343-2021, https://doi.org/10.5194/bg-18-343-2021, 2021
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Boreal forests in eastern Siberia are an essential component of global climate patterns. We use a physically based model and field measurements to study the interactions between forests, permanently frozen ground and the atmosphere. We find that forests exert a strong control on the thermal state of permafrost through changing snow cover dynamics and altering the surface energy balance, through absorbing most of the incoming solar radiation and suppressing below-canopy turbulent fluxes.
Mareike Wieczorek and Ulrike Herzschuh
Earth Syst. Sci. Data, 12, 3515–3528, https://doi.org/10.5194/essd-12-3515-2020, https://doi.org/10.5194/essd-12-3515-2020, 2020
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Relative pollen productivity (RPP) estimates are used to estimate vegetation cover from pollen records. This study provides (i) a compilation of northern hemispheric RPP studies, allowing researchers to identify suitable sets for their study region and to identify data gaps for future research, and (ii) taxonomically harmonized, unified RPP sets for China, Europe, North America, and the whole Northern Hemisphere, generated from the available studies.
Basil A. S. Davis, Manuel Chevalier, Philipp Sommer, Vachel A. Carter, Walter Finsinger, Achille Mauri, Leanne N. Phelps, Marco Zanon, Roman Abegglen, Christine M. Åkesson, Francisca Alba-Sánchez, R. Scott Anderson, Tatiana G. Antipina, Juliana R. Atanassova, Ruth Beer, Nina I. Belyanina, Tatiana A. Blyakharchuk, Olga K. Borisova, Elissaveta Bozilova, Galina Bukreeva, M. Jane Bunting, Eleonora Clò, Daniele Colombaroli, Nathalie Combourieu-Nebout, Stéphanie Desprat, Federico Di Rita, Morteza Djamali, Kevin J. Edwards, Patricia L. Fall, Angelica Feurdean, William Fletcher, Assunta Florenzano, Giulia Furlanetto, Emna Gaceur, Arsenii T. Galimov, Mariusz Gałka, Iria García-Moreiras, Thomas Giesecke, Roxana Grindean, Maria A. Guido, Irina G. Gvozdeva, Ulrike Herzschuh, Kari L. Hjelle, Sergey Ivanov, Susanne Jahns, Vlasta Jankovska, Gonzalo Jiménez-Moreno, Monika Karpińska-Kołaczek, Ikuko Kitaba, Piotr Kołaczek, Elena G. Lapteva, Małgorzata Latałowa, Vincent Lebreton, Suzanne Leroy, Michelle Leydet, Darya A. Lopatina, José Antonio López-Sáez, André F. Lotter, Donatella Magri, Elena Marinova, Isabelle Matthias, Anastasia Mavridou, Anna Maria Mercuri, Jose Manuel Mesa-Fernández, Yuri A. Mikishin, Krystyna Milecka, Carlo Montanari, César Morales-Molino, Almut Mrotzek, Castor Muñoz Sobrino, Olga D. Naidina, Takeshi Nakagawa, Anne Birgitte Nielsen, Elena Y. Novenko, Sampson Panajiotidis, Nata K. Panova, Maria Papadopoulou, Heather S. Pardoe, Anna Pędziszewska, Tatiana I. Petrenko, María J. Ramos-Román, Cesare Ravazzi, Manfred Rösch, Natalia Ryabogina, Silvia Sabariego Ruiz, J. Sakari Salonen, Tatyana V. Sapelko, James E. Schofield, Heikki Seppä, Lyudmila Shumilovskikh, Normunds Stivrins, Philipp Stojakowits, Helena Svobodova Svitavska, Joanna Święta-Musznicka, Ioan Tantau, Willy Tinner, Kazimierz Tobolski, Spassimir Tonkov, Margarita Tsakiridou, Verushka Valsecchi, Oksana G. Zanina, and Marcelina Zimny
Earth Syst. Sci. Data, 12, 2423–2445, https://doi.org/10.5194/essd-12-2423-2020, https://doi.org/10.5194/essd-12-2423-2020, 2020
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The Eurasian Modern Pollen Database (EMPD) contains pollen counts and associated metadata for 8134 modern pollen samples from across the Eurasian region. The EMPD is part of, and complementary to, the European Pollen Database (EPD) which contains data on fossil pollen found in Late Quaternary sedimentary archives. The purpose of the EMPD is to provide calibration datasets and other data to support palaeoecological research on past climates and vegetation cover over the Quaternary period.
Rita Glowienka-Hense, Andreas Hense, Sebastian Brune, and Johanna Baehr
Adv. Stat. Clim. Meteorol. Oceanogr., 6, 103–113, https://doi.org/10.5194/ascmo-6-103-2020, https://doi.org/10.5194/ascmo-6-103-2020, 2020
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A new method for weather and climate forecast model evaluation with respect to observations is proposed. Individually added values are estimated for each model, together with shared information both models provide equally on the observations. Finally, shared model information, which is not present in the observations, is calculated. The method is applied to two examples from climate and weather forecasting, showing new perspectives for model evaluation.
Heike H. Zimmermann, Kathleen R. Stoof-Leichsenring, Stefan Kruse, Juliane Müller, Ruediger Stein, Ralf Tiedemann, and Ulrike Herzschuh
Ocean Sci., 16, 1017–1032, https://doi.org/10.5194/os-16-1017-2020, https://doi.org/10.5194/os-16-1017-2020, 2020
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This study targets high-resolution, diatom-specific sedimentary ancient DNA using a DNA metabarcoding approach. Diatom DNA has been preserved with substantial taxonomic richness in the eastern Fram Strait over the past 30 000 years with taxonomic composition being dominated by cold-water and sea-ice-associated diatoms. Taxonomic reorganisations took place after the Last Glacial Maximum and after the Younger Dryas. Peak proportions of pennate diatoms might indicate past sea-ice presence.
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Short summary
Data–data and data–model vegetation comparisons are commonly based on comparing single vegetation estimates. While this approach generates good results on average, reducing pollen assemblages to single single plant functional type (PFT) or biome estimates can oversimplify the vegetation signal. We propose using a multivariate metric, the Earth mover's distance (EMD), to include more details about the vegetation structure when performing such comparisons.
Data–data and data–model vegetation comparisons are commonly based on comparing single...
