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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" dtd-version="3.0"><?xmltex \hack{\allowdisplaybreaks}?>
  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">CP</journal-id>
<journal-title-group>
<journal-title>Climate of the Past</journal-title>
<abbrev-journal-title abbrev-type="publisher">CP</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Clim. Past</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1814-9332</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/cp-13-545-2017</article-id><title-group><article-title>Assimilation of pseudo-tree-ring-width observations into an atmospheric general circulation model</article-title>
      </title-group><?xmltex \runningtitle{Assimilation of pseudo-tree-ring-width observations}?><?xmltex \runningauthor{W.~Acevedo et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Acevedo</surname><given-names>Walter</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Fallah</surname><given-names>Bijan</given-names></name>
          <email>bijan.fallah@met.fu-berlin.de</email>
        <ext-link>https://orcid.org/0000-0003-3302-2030</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Reich</surname><given-names>Sebastian</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Cubasch</surname><given-names>Ulrich</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Institut für Meteorologie, Freie Universität Berlin, Carl-Heinrich-Becker-Weg 6–10, 12165 Berlin, Germany</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Institut für  Mathematik, Universität Potsdam, Karl-Liebknecht-Strasse 24–25, 14476 Potsdam, Germany</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Bijan Fallah (bijan.fallah@met.fu-berlin.de)</corresp></author-notes><pub-date><day>31</day><month>May</month><year>2017</year></pub-date>
      
      <volume>13</volume>
      <issue>5</issue>
      <fpage>545</fpage><lpage>557</lpage>
      <history>
        <date date-type="received"><day>14</day><month>September</month><year>2016</year></date>
           <date date-type="rev-request"><day>26</day><month>September</month><year>2016</year></date>
           <date date-type="rev-recd"><day>27</day><month>March</month><year>2017</year></date>
           <date date-type="accepted"><day>30</day><month>March</month><year>2017</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://cp.copernicus.org/articles/13/545/2017/cp-13-545-2017.html">This article is available from https://cp.copernicus.org/articles/13/545/2017/cp-13-545-2017.html</self-uri>
<self-uri xlink:href="https://cp.copernicus.org/articles/13/545/2017/cp-13-545-2017.pdf">The full text article is available as a PDF file from https://cp.copernicus.org/articles/13/545/2017/cp-13-545-2017.pdf</self-uri>


      <abstract>
    <p>Paleoclimate data assimilation (DA) is a promising technique to
systematically combine the information from climate model simulations and
proxy records. Here, we investigate the assimilation of tree-ring-width (TRW)
chronologies into an atmospheric global climate model using ensemble Kalman
filter (EnKF) techniques and a process-based tree-growth forward model as an
observation operator. Our results, within a perfect-model experiment setting,
indicate that the “online DA” approach did not outperform the
“off-line” one, despite its
considerable additional implementation complexity. On the other hand, it was
observed that the nonlinear response of tree growth to surface temperature
and soil moisture does deteriorate the operation of the time-averaged EnKF
methodology. Moreover, for the first time we show that this skill loss
appears significantly sensitive to the structure of the growth rate function,
used to represent the principle of limiting factors (PLF) within the forward
model. In general, our experiments showed that the error reduction achieved
by assimilating pseudo-TRW chronologies is modulated by the magnitude of the
yearly internal variability in the model. This result might help the
dendrochronology community to optimize their sampling efforts.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>The low-frequency temporal variability in the
climate system cannot be estimated from the available time span of
instrumental climate records. Accordingly, paleoclimate reconstruction must
necessarily rely on the use of the paleoclimate proxy records. These natural
archives exhibit several problematic features, e.g., low time resolution,
sparse and irregular spatial distribution, complex nonlinear response to
climate, and high noise levels. Therefore the proper extraction of the
climate signal contained therein can often remain opaque <xref ref-type="bibr" rid="bib1.bibx17" id="paren.1"/>.
To date, many different ideas have been proposed in order to link proxy
records to the paleoclimate conditions where they were created, e.g.,
data-driven statistical techniques, climate model hindcasts and Bayesian
probabilistic methods (see <xref ref-type="bibr" rid="bib1.bibx11" id="altparen.2"/>, for a recent review).
Among this plethora of approaches, data assimilation (DA) methodologies are
today particularly appealing as they deliver estimates of paleoclimate
quantities by systematically combining the information of paleoclimate
records with the dynamical consistence of climate simulations
<xref ref-type="bibr" rid="bib1.bibx9 bib1.bibx21" id="paren.3"/>.</p>
      <p>So far, several very diverse paleo-DA schemes have been investigated,
including pattern nudging <xref ref-type="bibr" rid="bib1.bibx66" id="paren.4"/>, forcing singular vectors
<xref ref-type="bibr" rid="bib1.bibx4 bib1.bibx64" id="paren.5"/>, 4D-Var <xref ref-type="bibr" rid="bib1.bibx47 bib1.bibx32" id="paren.6"/>,
particle filters
<xref ref-type="bibr" rid="bib1.bibx3 bib1.bibx16 bib1.bibx15 bib1.bibx40 bib1.bibx41" id="paren.7"/> and
ensemble Kalman filter techniques (EnKF;
<xref ref-type="bibr" rid="bib1.bibx29 bib1.bibx5 bib1.bibx48 bib1.bibx56" id="altparen.8"/>; see
<xref ref-type="bibr" rid="bib1.bibx26 bib1.bibx68 bib1.bibx20" id="altparen.9"/> for further references).</p>
      <p>An important difference between paleo-DA and traditional meteorological DA is
that the assimilation period might be very long compared to the timescales of
the dynamical model. Under these conditions, the randomizing action of the
chaotic model dynamics becomes dominant and consequently the forecast appears
completely de-correlated from the previous analysis state. This phenomenon,
currently referred to as an “off-line regime”, has been observed in several
paleo-DA studies <xref ref-type="bibr" rid="bib1.bibx29 bib1.bibx5 bib1.bibx48 bib1.bibx41" id="paren.10"/>.
Furthermore, some recent studies have assumed the presence of the off-line
condition and accordingly have removed the re-initialization step after
assimilation altogether <xref ref-type="bibr" rid="bib1.bibx56 bib1.bibx12 bib1.bibx21" id="paren.11"/>. These types of
DA methodologies will be referred to in this paper as “off-line DA” techniques, in order to contrast them with traditional “online DA” techniques, where the state of the model is updated after the assimilation
of observations. Note that despite their lack of accumulation of
observational information over time, off-line DA methodologies have already
been shown to be more robust than traditional climate field reconstruction
(CFR) techniques based on orthogonal empirical functions and stationarity
assumptions <xref ref-type="bibr" rid="bib1.bibx56 bib1.bibx21" id="paren.12"/>.</p>
      <p>A typical assumption in most of the paleo-DA studies so far conducted is that
the climate–proxy relation is linear. Nonetheless, currently it is widely
recognized that climate proxies are the result of complex recording
processes, which can be of a physical, chemical and biological nature. More
realistic methodologies have been recently sculpted by the paleoclimate
community in order to investigate the climate–proxy relationship, considering
the distinct processes whereby the climate signal is recorded in proxy
archives. Proxy forward modeling <xref ref-type="bibr" rid="bib1.bibx27 bib1.bibx17" id="paren.13"/> appears to be
one of the most promising methodologies in this area. In a proxy forward
model the climate forcing is used as input data for producing the artificial
proxy records which can be directly compared with the actual ones. One
application of proxy forward models is the prediction of the evolution of
proxy archives <xref ref-type="bibr" rid="bib1.bibx63" id="paren.14"/>. They can also be applied within climate
reconstruction strategies by using probabilistic inversion methods like
Bayesian hierarchical modeling <xref ref-type="bibr" rid="bib1.bibx60" id="paren.15"/>, Markov Chain Monte
Carlo (MCMC) <xref ref-type="bibr" rid="bib1.bibx7" id="paren.16"/> and DA <xref ref-type="bibr" rid="bib1.bibx27" id="paren.17"/>.</p>
      <p>Several recent studies have investigated the applicability of process-based
forward models in a paleo-DA setting
<xref ref-type="bibr" rid="bib1.bibx27 bib1.bibx1 bib1.bibx12 bib1.bibx21" id="paren.18"/>. <xref ref-type="bibr" rid="bib1.bibx1" id="text.19"/> (AC15,
hereafter) utilized the process-based tree-ring-width (TRW) forward model Vaganov–Shashkin Lite
(VSL) <xref ref-type="bibr" rid="bib1.bibx62" id="paren.20"/> and an online EnKF scheme to assimilate
pseudo-TRW records into a chaotic two-scale dynamical system. They found that
the nonlinearities of the forward model may deteriorate the performance of
the EnKF. Furthermore, they observed that this loss of skill may be
ameliorated by means of a fuzzy logic (FL)-based extension of the VSL model.
<xref ref-type="bibr" rid="bib1.bibx41" id="normal.21"/> compared the off-line and online implementations of a
“degenerate particle filter” applied to a low-resolution Earth system
model. They found similar skill for both methods on the continental and
hemispheric scales. Nonetheless, they concluded that in the off-line method
the temporal consistency of the model is lost. On the other hand,
<xref ref-type="bibr" rid="bib1.bibx12" id="text.22"/> used three different nonlinear proxy forward models
(including VSL) and an off-line EnKF scheme to assimilate TRW, coral and ice
core records into two different isotope-enabled atmospheric general
circulation model (AGCMs). They demonstrated that the linear–univariate models
for tree-ring width may not capture the AGCM's climate, especially for
regions where the tree's growth is dominated by moisture.</p>
      <p>This paper follows the rationale of AC15 but within a more realistic
scenario, where an AGCM is used as a dynamical system and the observational
network resembles the currently available TRW chronologies. The purpose of
this study is then to contribute to the present knowledge of paleo-DA
techniques by addressing the following two questions:
<list list-type="custom"><list-item><label>i.</label><p>Does the off-line regime naturally appear for the assimilation of
TRW records into an AGCM?</p></list-item><list-item><label>ii.</label><p>Is the FL-based extension of the VSL model still useful to improve the
performance of a time-averaged EnKF technique when a climate model is used?</p></list-item></list></p>
      <p>This study is structured as follows. In Sect. <xref ref-type="sec" rid="Ch1.S2"/> we describe
the DA technique, the TRW forward model and the climate model as well as the
experimental setting used. Our numerical results are shown in
Sect. <xref ref-type="sec" rid="Ch1.S3"/>, followed by a discussion in Sect. <xref ref-type="sec" rid="Ch1.S4"/>.</p>
</sec>
<sec id="Ch1.S2">
  <title>Materials and methods</title>
<sec id="Ch1.S2.SS1">
  <title>Data assimilation basics</title>
      <p>In this paper, the term DA designates the process of estimating the state of a
system using observations and the physical laws governing the evolution of
the system as represented in a numerical model <xref ref-type="bibr" rid="bib1.bibx57" id="paren.23"/>. In a
typical DA scheme, a dynamical model is integrated in time until observations
become available. Afterwards, the predicted state, also known as forecast, is
“updated” using the observational information in order to obtain a
corrected state, also known as the analysis. Finally, the model is
re-initialized from the analysis state and propagated in time until the next
assimilation time, completing the “analysis” cycle. DA methods
have evolved from very empirical approaches, such as Newtonian relaxation, to
probabilistic ones that attempt to estimate the probability density function
(PDF) of the model state conditional on the observations (see
<xref ref-type="bibr" rid="bib1.bibx31" id="altparen.24"/>, <xref ref-type="bibr" rid="bib1.bibx33" id="altparen.25"/> and <xref ref-type="bibr" rid="bib1.bibx49" id="altparen.26"/>, for reviews).</p>
      <p>Among the currently available DA techniques, EnKF <xref ref-type="bibr" rid="bib1.bibx10" id="paren.27"/>
occupies an outstanding position for several reasons. It offers an
appealing trade-off between accuracy and computational expenses. It works
robustly for sparse observational networks and a moderate number of ensemble
members <xref ref-type="bibr" rid="bib1.bibx67" id="paren.28"/>. Furthermore, EnKF's implementation does not
require any modification of the model's code and uncertainty estimates can be
directly obtained from the ensemble spread <xref ref-type="bibr" rid="bib1.bibx22" id="paren.29"/>. The main
disadvantage of EnKF, within a paleoclimate setting, is its inability to
handle non-Gaussian PDFs, which can easily arise from the nonlinearities of
climate models and observation operators. Recently, there have been several
developments in the field of nonlinear DA for high-dimension systems
<xref ref-type="bibr" rid="bib1.bibx65" id="paren.30"/>; however, at the present fully non-Gaussian DA
techniques are still prohibitively expensive to run for general circulation
climate models.</p>
<sec id="Ch1.S2.SS1.SSS1">
  <title>Kalman filter</title>
      <p>Within the Kalman filter (KF) <xref ref-type="bibr" rid="bib1.bibx30" id="paren.31"/>, the PDF of forecast state
<inline-formula><mml:math id="M1" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is assumed to be given by a Gaussian function with mean
<inline-formula><mml:math id="M2" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">x</mml:mi><mml:mi>f</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> and covariance <inline-formula><mml:math id="M3" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi>f</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>:

                  <disp-formula id="Ch1.E1" content-type="numbered"><mml:math id="M4" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi>p</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>)</mml:mo><mml:mo>∝</mml:mo><mml:mi>exp⁡</mml:mi><mml:mfenced open="(" close=")"><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:msup><mml:mfenced close=")" open="("><mml:mi mathvariant="bold">x</mml:mi><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold">x</mml:mi><mml:mi>f</mml:mi></mml:msup></mml:mfenced><mml:mi>T</mml:mi></mml:msup><mml:msup><mml:mfenced open="(" close=")"><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi>f</mml:mi></mml:msup></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mfenced open="(" close=")"><mml:mi mathvariant="bold">x</mml:mi><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold">x</mml:mi><mml:mi>f</mml:mi></mml:msup></mml:mfenced></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p>The observations <inline-formula><mml:math id="M5" display="inline"><mml:mrow><mml:mi mathvariant="bold">y</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> are also assumed to have Gaussian errors
and therefore the conditional probability of the observation vector <inline-formula><mml:math id="M6" display="inline"><mml:mi mathvariant="bold-italic">y</mml:mi></mml:math></inline-formula>
given the state <inline-formula><mml:math id="M7" display="inline"><mml:mi mathvariant="bold">x</mml:mi></mml:math></inline-formula> is

                  <disp-formula id="Ch1.E2" content-type="numbered"><mml:math id="M8" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi>p</mml:mi><mml:mfenced open="(" close=")"><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>∣</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="bold">x</mml:mi></mml:mfenced><mml:mo>∝</mml:mo><mml:mi>exp⁡</mml:mi><mml:mfenced open="(" close=")"><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:msup><mml:mfenced close=")" open="("><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi mathvariant="normal">H</mml:mi><mml:mo stretchy="true" mathvariant="normal">^</mml:mo></mml:mover><mml:msup><mml:mi mathvariant="bold">x</mml:mi><mml:mi>f</mml:mi></mml:msup></mml:mfenced><mml:mi>T</mml:mi></mml:msup><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mfenced open="(" close=")"><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi mathvariant="normal">H</mml:mi><mml:mo mathvariant="normal" stretchy="true">^</mml:mo></mml:mover><mml:msup><mml:mi mathvariant="bold">x</mml:mi><mml:mi>f</mml:mi></mml:msup></mml:mfenced></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

            where <inline-formula><mml:math id="M9" display="inline"><mml:mover accent="true"><mml:mi mathvariant="normal">H</mml:mi><mml:mo stretchy="true" mathvariant="normal">^</mml:mo></mml:mover></mml:math></inline-formula> is the observation operator and <inline-formula><mml:math id="M10" display="inline"><mml:mi mathvariant="bold">R</mml:mi></mml:math></inline-formula> is
the observation error covariance matrix. Following the Bayes
theorem, the conditional probability of the state given the observations,
i.e., the analysis PDF, is

                  <disp-formula specific-use="align" content-type="numbered"><mml:math id="M11" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi>p</mml:mi><mml:mfenced close=")" open="("><mml:mi mathvariant="bold">x</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>∣</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="bold-italic">y</mml:mi></mml:mfenced><mml:mo>∝</mml:mo><mml:mi>exp⁡</mml:mi><mml:mfenced open="(" close=""><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:msup><mml:mfenced open="(" close=")"><mml:mi mathvariant="bold">x</mml:mi><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold">x</mml:mi><mml:mi>f</mml:mi></mml:msup></mml:mfenced><mml:mi>T</mml:mi></mml:msup><mml:msup><mml:mfenced open="(" close=")"><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi>f</mml:mi></mml:msup></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mfenced close=")" open="("><mml:mi mathvariant="bold">x</mml:mi><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold">x</mml:mi><mml:mi>f</mml:mi></mml:msup></mml:mfenced></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E3"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mo>-</mml:mo><mml:mfenced close=")" open="."><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:msup><mml:mfenced close=")" open="("><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi mathvariant="normal">H</mml:mi><mml:mo stretchy="true" mathvariant="normal">^</mml:mo></mml:mover><mml:msup><mml:mi mathvariant="bold">x</mml:mi><mml:mi>f</mml:mi></mml:msup></mml:mfenced><mml:mi>T</mml:mi></mml:msup><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mfenced close=")" open="("><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi mathvariant="normal">H</mml:mi><mml:mo stretchy="true" mathvariant="normal">^</mml:mo></mml:mover><mml:msup><mml:mi mathvariant="bold">x</mml:mi><mml:mi>f</mml:mi></mml:msup></mml:mfenced></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              Finally, assuming that <inline-formula><mml:math id="M12" display="inline"><mml:mover accent="true"><mml:mi mathvariant="normal">H</mml:mi><mml:mo stretchy="true" mathvariant="normal">^</mml:mo></mml:mover></mml:math></inline-formula> is a linear function,
<inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mfenced close=")" open="("><mml:mi mathvariant="bold">x</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>∣</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="bold-italic">y</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula> is also a Gaussian function whose
mean and covariance can be calculated by the Kalman update
equations <xref ref-type="bibr" rid="bib1.bibx36" id="paren.32"/>:

                  <disp-formula specific-use="align" content-type="numbered"><mml:math id="M14" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E4"><mml:mtd/><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msup><mml:mi mathvariant="bold">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold">x</mml:mi><mml:mi>f</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:mi mathvariant="bold">K</mml:mi><mml:mfenced close=")" open="("><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi mathvariant="normal">H</mml:mi><mml:mo stretchy="true" mathvariant="normal">^</mml:mo></mml:mover><mml:msup><mml:mi mathvariant="bold">x</mml:mi><mml:mi>f</mml:mi></mml:msup></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E5"><mml:mtd/><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mfenced open="(" close=")"><mml:mi mathvariant="bold">I</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="bold">K</mml:mi><mml:mover accent="true"><mml:mi mathvariant="normal">H</mml:mi><mml:mo mathvariant="normal" stretchy="true">^</mml:mo></mml:mover></mml:mfenced><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi>f</mml:mi></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              where the Kalman gain matrix <inline-formula><mml:math id="M15" display="inline"><mml:mi mathvariant="bold">K</mml:mi></mml:math></inline-formula> is given by:

                  <disp-formula id="Ch1.E6" content-type="numbered"><mml:math id="M16" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="bold">K</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi>f</mml:mi></mml:msup><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">H</mml:mi><mml:mo mathvariant="normal" stretchy="true">^</mml:mo></mml:mover><mml:mo>†</mml:mo></mml:msup><mml:msup><mml:mfenced close=")" open="("><mml:mover accent="true"><mml:mi mathvariant="normal">H</mml:mi><mml:mo stretchy="true" mathvariant="normal">^</mml:mo></mml:mover><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi>f</mml:mi></mml:msup><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">H</mml:mi><mml:mo mathvariant="normal" stretchy="true">^</mml:mo></mml:mover><mml:mo>†</mml:mo></mml:msup><mml:mo>+</mml:mo><mml:mi mathvariant="bold">R</mml:mi></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
</sec>
<sec id="Ch1.S2.SS1.SSS2">
  <title>Ensemble Kalman filter</title>
      <p>For realistic geophysical models, the dimensionality of the model state can
be very high and then the calculation and storage of the covariance matrices
can be prohibitively expensive. A solution to this problem is provided by the
EnKF <xref ref-type="bibr" rid="bib1.bibx18" id="paren.33"/>, which uses an ensemble of model states
(<inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:mi mathvariant="bold">X</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="bold">x</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:mi mathvariant="normal">…</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi mathvariant="bold">x</mml:mi><mml:mi>m</mml:mi></mml:msub></mml:mfenced></mml:mrow></mml:math></inline-formula>) to
approximate KF equations.</p>
      <p>Following this approach, the mean and covariance of the forecast take the following form:

                  <disp-formula id="Ch1.E7" content-type="numbered"><mml:math id="M18" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>〈</mml:mo><mml:msub><mml:mi mathvariant="bold">X</mml:mi><mml:mi>f</mml:mi></mml:msub><mml:mo>〉</mml:mo><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mi>m</mml:mi></mml:mfrac></mml:mstyle><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>m</mml:mi></mml:munderover><mml:msubsup><mml:mi mathvariant="bold">x</mml:mi><mml:mi>i</mml:mi><mml:mi>f</mml:mi></mml:msubsup><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mspace linebreak="nobreak" width="0.25em"/><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi>f</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mi>m</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:mfrac></mml:mstyle><mml:msubsup><mml:mi mathvariant="bold">X</mml:mi><mml:mi>f</mml:mi><mml:mo>′</mml:mo></mml:msubsup><mml:msup><mml:mfenced open="(" close=")"><mml:msubsup><mml:mi mathvariant="bold">X</mml:mi><mml:mrow><mml:mspace linebreak="nobreak" width="-0.125em"/><mml:mi>f</mml:mi></mml:mrow><mml:mo>′</mml:mo></mml:msubsup></mml:mfenced><mml:mi>T</mml:mi></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

            Here <inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">X</mml:mi><mml:mi>f</mml:mi><mml:mo>′</mml:mo></mml:msubsup><mml:mo>∈</mml:mo><mml:msup><mml:mi mathvariant="double-struck">R</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>×</mml:mo><mml:mi>m</mml:mi></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> denotes the forecast ensemble
deviation matrix:

                  <disp-formula id="Ch1.E8" content-type="numbered"><mml:math id="M20" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msubsup><mml:mi mathvariant="bold">X</mml:mi><mml:mi>f</mml:mi><mml:mo>′</mml:mo></mml:msubsup><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold">X</mml:mi><mml:mi>f</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mo>〈</mml:mo><mml:msub><mml:mi mathvariant="bold">X</mml:mi><mml:mi>f</mml:mi></mml:msub><mml:mo>〉</mml:mo><mml:msup><mml:mi mathvariant="bold">e</mml:mi><mml:mi>T</mml:mi></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

            where <inline-formula><mml:math id="M21" display="inline"><mml:mrow><mml:mi mathvariant="bold">e</mml:mi><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi mathvariant="normal">…</mml:mi><mml:mo>,</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>)</mml:mo><mml:mo>∈</mml:mo><mml:msup><mml:mi mathvariant="double-struck">R</mml:mi><mml:mi>m</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>. An analysis ensemble whose
covariance satisfies Eq. (<xref ref-type="disp-formula" rid="Ch1.E5"/>) can be generated in
different ways, which can be classified into two main families: stochastic
and deterministic filters <xref ref-type="bibr" rid="bib1.bibx22" id="paren.34"/>.</p>
      <p>In the stochastic approach an observational ensemble <inline-formula><mml:math id="M22" display="inline"><mml:mi mathvariant="bold">Y</mml:mi></mml:math></inline-formula> is
generated by adding realizations of the observational noise to the
observation vector <inline-formula><mml:math id="M23" display="inline"><mml:mi mathvariant="bold-italic">y</mml:mi></mml:math></inline-formula>. The analysis ensemble is then created by the
following update equation:

                  <disp-formula id="Ch1.E9" content-type="numbered"><mml:math id="M24" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold">X</mml:mi><mml:mi>f</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:mi mathvariant="bold">K</mml:mi><mml:mfenced close=")" open="("><mml:mi mathvariant="bold">Y</mml:mi><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi mathvariant="normal">H</mml:mi><mml:mo mathvariant="normal" stretchy="true">^</mml:mo></mml:mover><mml:msub><mml:mi mathvariant="bold">X</mml:mi><mml:mi>f</mml:mi></mml:msub></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

            In the deterministic approach, instead of creating an ensemble of
observations, the analysis mean and deviations are calculated using update
formulae which do not involve random numbers (see <xref ref-type="bibr" rid="bib1.bibx59" id="altparen.35"/> for further references).</p>
      <p>A practical problem of EnKF schemes is that due to the limited ensemble
size, the forecast uncertainty is usually underestimated. This leads to an
excessive confidence in the forecast, and after several assimilation cycles
the observations may be completely ignored. This situation is normally
avoided by means of an ad hoc procedure known as “covariance inflation”,
where the forecast covariance matrix is multiplied by a constant greater than 1. Another undesired consequence of the limited ensemble size is that the
ensemble state at any grid point will present non-negligible spurious
correlations with observations located far apart in space. This difficulty is
solved using another ad hoc procedure known as “covariance localization”.
Here, we utilize the R localization <xref ref-type="bibr" rid="bib1.bibx28" id="paren.36"/>, where the
entries of the observation error covariance matrix are multiplied by a
function that increases exponentially with distance.</p>
</sec>
<sec id="Ch1.S2.SS1.SSS3">
  <title>Time-averaged ensemble Kalman filter</title>
      <p>The EnKF algorithm was initially designed to estimate the instantaneous state
of a model given instantaneous observations. As a consequence, EnKF cannot be
directly applied to paleoclimate data given that the observational
information present in proxy records is typically the average of a function
of the state over long time periods. A solution to this conflict is provided
by the time-averaged EnKF <xref ref-type="bibr" rid="bib1.bibx14" id="paren.37"/>, where the instantaneous forecast
is decomposed into its time-averaged part and the anomalies around it.
Afterwards, the original EnKF update formula is used to assimilate the
time-averaged observations into the time-averaged forecast, obtaining the
time-averaged analysis. Finally, the instantaneous analysis is form by adding
the unaltered time-averaged forecast anomalies to the time-averaged analysis.
This approach is based on the assumption that the observations can only
contain time-averaged information <xref ref-type="bibr" rid="bib1.bibx14" id="paren.38"/>. If the time-averaged period is considerably longer than the timescales of the dynamical model,
which may easily be the case for paleoclimate records, after assimilation the
ensemble spread can reach climatological levels, leading to a complete lack
of estimation skill for the forecast quantities. This behavior, currently
referred to as the off-line regime, was first observed for the time-averaged
EnKF applied to a quasi-geostrophic atmospheric jet model
<xref ref-type="bibr" rid="bib1.bibx29 bib1.bibx48" id="paren.39"/>. Afterwards, several studies used the
simplified off-line time-averaged EnKF approach with global climate models
<xref ref-type="bibr" rid="bib1.bibx5 bib1.bibx56 bib1.bibx12" id="paren.40"/> assuming the presence of the off-line
regime. However, to our knowledge, there had not been numerical evidence of
the onset of off-line conditions for a full time-averaged EnKF algorithm
applied to an AGCM. As mentioned in the introduction, filling this knowledge
gap is one the objectives of this paper.</p>
</sec>
</sec>
<sec id="Ch1.S2.SS2">
  <title>TRW forward model</title>
      <p>The VSL model for TRW chronologies offers an intermediate-complexity approach
between ecophysiological and completely data-driven models
<xref ref-type="bibr" rid="bib1.bibx62 bib1.bibx60" id="paren.41"/>, where the climate-driven component of
tree-ring growth is parameterized by way of a simple representation of the
principle of limiting factors (PLF) <xref ref-type="bibr" rid="bib1.bibx19" id="paren.42"/>. The biological
concept of PLF states that the pace at which a plant develops is controlled
by the single basic growth resource, typically either energy or water, that
is in shortest supply. Within VSL the limiting factors considered are
near-surface air temperature (<inline-formula><mml:math id="M25" display="inline"><mml:mi>T</mml:mi></mml:math></inline-formula>) and soil moisture (<inline-formula><mml:math id="M26" display="inline"><mml:mi>M</mml:mi></mml:math></inline-formula>). These variables
influence tree-ring growth via the “growth response” functions

                <disp-formula id="Ch1.E10" content-type="numbered"><mml:math id="M27" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="normal">Ψ</mml:mi><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>T</mml:mi><mml:mo>-</mml:mo><mml:msup><mml:mi>T</mml:mi><mml:mi mathvariant="normal">L</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msup><mml:mi>T</mml:mi><mml:mi mathvariant="normal">U</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mi>T</mml:mi><mml:mi mathvariant="normal">L</mml:mi></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced></mml:mrow></mml:math></disp-formula>

          and

                <disp-formula id="Ch1.E11" content-type="numbered"><mml:math id="M28" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="normal">Ψ</mml:mi><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>M</mml:mi><mml:mo>-</mml:mo><mml:msup><mml:mi>M</mml:mi><mml:mi mathvariant="normal">L</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msup><mml:mi>M</mml:mi><mml:mi mathvariant="normal">U</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mi>M</mml:mi><mml:mi mathvariant="normal">L</mml:mi></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          where <inline-formula><mml:math id="M29" display="inline"><mml:mi mathvariant="normal">Ψ</mml:mi></mml:math></inline-formula> is the piece-wise linear “standard ramp” function
<xref ref-type="bibr" rid="bib1.bibx61" id="paren.43"/>
            <disp-formula id="Ch1.Ex2"><mml:math id="M30" display="block"><mml:mrow><mml:mi mathvariant="normal">Ψ</mml:mi><mml:mo>(</mml:mo><mml:mi>u</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mfenced open="{" close=""><mml:mtable columnspacing="1em" rowspacing="0.2ex" class="cases" columnalign="left left" framespacing="0em"><mml:mtr><mml:mtd><mml:mn mathvariant="normal">0</mml:mn></mml:mtd><mml:mtd><mml:mrow><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mtext>if</mml:mtext><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mn mathvariant="normal">0</mml:mn><mml:mi mathvariant="italic">⩾</mml:mi><mml:mi>u</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mi>u</mml:mi></mml:mtd><mml:mtd><mml:mrow><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mtext>if</mml:mtext><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mn mathvariant="normal">0</mml:mn><mml:mo>&lt;</mml:mo><mml:mi>u</mml:mi><mml:mi mathvariant="italic">⩽</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mn mathvariant="normal">1</mml:mn></mml:mtd><mml:mtd><mml:mrow><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mtext>if</mml:mtext><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mi>u</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced></mml:mrow></mml:math></disp-formula>
          <inline-formula><mml:math id="M31" display="inline"><mml:mrow><mml:msup><mml:mi>T</mml:mi><mml:mi mathvariant="normal">L</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:msup><mml:mi>M</mml:mi><mml:mi mathvariant="normal">L</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> denote minimum thresholds for temperature
and moisture below which there is no growth, and <inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:msup><mml:mi>T</mml:mi><mml:mi mathvariant="normal">U</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M34" display="inline"><mml:mrow><mml:msup><mml:mi>M</mml:mi><mml:mi mathvariant="normal">U</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> are upper thresholds above which tree growth is optimal.
Afterwards, the growth rate <inline-formula><mml:math id="M35" display="inline"><mml:mrow><mml:msub><mml:mi>G</mml:mi><mml:mi mathvariant="normal">MIN</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is determined by the smallest
growth response, i.e.,

                <disp-formula id="Ch1.E12" content-type="numbered"><mml:math id="M36" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi>G</mml:mi><mml:mi mathvariant="normal">MIN</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo movablelimits="false">min⁡</mml:mo><mml:mfenced open="{" close="}"><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:msub></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

          Finally, the yearly TRW values <inline-formula><mml:math id="M37" display="inline"><mml:mi>W</mml:mi></mml:math></inline-formula> are obtained by integrating in time the
growth rate modulated by the relative insolation <inline-formula><mml:math id="M38" display="inline"><mml:mi>I</mml:mi></mml:math></inline-formula>:

                <disp-formula id="Ch1.E13" content-type="numbered"><mml:math id="M39" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi>W</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mi mathvariant="italic">τ</mml:mi></mml:mrow><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:munderover><mml:msub><mml:mi>G</mml:mi><mml:mi mathvariant="normal">MIN</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi>I</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>t</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

          Here <inline-formula><mml:math id="M40" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula> stands for the number of the year, <inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the time at the end of the year <inline-formula><mml:math id="M42" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M43" display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula> is the
length of the year (12 months).</p>
      <p>Regarding DA, VSL presents two challenging nonlinear aspects:
(i) a “thresholded response” <xref ref-type="bibr" rid="bib1.bibx17" id="paren.44"/>, arising from the
insensitivity of trees to climate variability during dormancy and optimal
growth, and (ii) “abrupt shifting of recorded variable”
<xref ref-type="bibr" rid="bib1.bibx1" id="paren.45"/>, coming from the structure of
Eq. (<xref ref-type="disp-formula" rid="Ch1.E12"/>). There, the use of the minimum function
implies that tree growth at a particular time can be limited by either
temperature or moisture. Accordingly, transitions between growth limitation
regimes necessarily happen in a sudden manner.</p>
<sec id="Ch1.S2.SS2.SSS1">
  <title>VSL from the fuzzy logic viewpoint</title>
      <p>The term fuzzy logic was coined by <xref ref-type="bibr" rid="bib1.bibx71" id="text.46"/> and refers to a
mathematical theory which has been very successful in modeling complex
systems involving imprecise data and vague knowledge of the underlying
mechanisms. Since its introduction, FL has greatly influenced
many disciplines, most notably control theory <xref ref-type="bibr" rid="bib1.bibx45" id="paren.47"/>. Within the
environmental sciences, FL has been applied in ecological and hydrological
modeling <xref ref-type="bibr" rid="bib1.bibx39 bib1.bibx52 bib1.bibx53" id="paren.48"/>. Regarding climate proxy
forward modeling, AC15 recently showed that the VSL model can be completely
embedded into the framework of FL. Within this reinterpretation, the growth
response function <inline-formula><mml:math id="M44" display="inline"><mml:mrow><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) corresponds to the
membership function to the set <inline-formula><mml:math id="M46" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) of optimal
temperature (moisture) conditions for tree growth. Temperature (moisture)
values lying below <inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:msup><mml:mi>T</mml:mi><mml:mi mathvariant="normal">L</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M49" display="inline"><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">L</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) present null values for
<inline-formula><mml:math id="M50" display="inline"><mml:mrow><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M51" display="inline"><mml:mrow><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and accordingly do not belong to
<inline-formula><mml:math id="M52" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M53" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>). On the other hand, temperature (moisture)
values lying above <inline-formula><mml:math id="M54" display="inline"><mml:mrow><mml:msup><mml:mi>T</mml:mi><mml:mi mathvariant="normal">U</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M55" display="inline"><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">U</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) lead to <inline-formula><mml:math id="M56" display="inline"><mml:mrow><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
(<inline-formula><mml:math id="M57" display="inline"><mml:mrow><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) values equal to <inline-formula><mml:math id="M58" display="inline"><mml:mn mathvariant="normal">1</mml:mn></mml:math></inline-formula>, meaning they belong completely to
<inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>). All the other temperature (moisture)
conditions present growth responses between <inline-formula><mml:math id="M61" display="inline"><mml:mn mathvariant="normal">0</mml:mn></mml:math></inline-formula> and <inline-formula><mml:math id="M62" display="inline"><mml:mn mathvariant="normal">1</mml:mn></mml:math></inline-formula>, and consequently they
are considered to belong partially to <inline-formula><mml:math id="M63" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M64" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>). This
idea of partial membership is the basis of fuzzy logic and the sets defined
this way are called fuzzy sets. Furthermore, the intersection of the fuzzy
sets <inline-formula><mml:math id="M65" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is again a fuzzy set
<inline-formula><mml:math id="M67" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mrow><mml:mi mathvariant="normal">T</mml:mi><mml:mo>∧</mml:mo><mml:mi mathvariant="normal">M</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, whose membership function can be
calculated by evaluating the minimum between <inline-formula><mml:math id="M68" display="inline"><mml:mrow><mml:msub><mml:mi>G</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:msub><mml:mi>G</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>:

                  <disp-formula id="Ch1.E14" content-type="numbered"><mml:math id="M70" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi>g</mml:mi><mml:mrow><mml:mi mathvariant="normal">T</mml:mi><mml:mo>∧</mml:mo><mml:mi mathvariant="normal">M</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mo movablelimits="false">min⁡</mml:mo><mml:mfenced close="}" open="{"><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:msub></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p>Equation (<xref ref-type="disp-formula" rid="Ch1.E14"/>) is completely equivalent to the
Eq. (<xref ref-type="disp-formula" rid="Ch1.E13"/>). Then VSL's growth rate function can be interpreted as the
membership function for the fuzzy intersection set <inline-formula><mml:math id="M71" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mrow><mml:mi mathvariant="normal">T</mml:mi><mml:mo>∧</mml:mo><mml:mi mathvariant="normal">M</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. In FL theory, the minimum function (Eq. <xref ref-type="disp-formula" rid="Ch1.E14"/>) is
one of the most popular representations of the intersection operation;
however, it is not the only one as a whole family of appropriate
functions actually exist referred to as t-norms (see <xref ref-type="bibr" rid="bib1.bibx45" id="altparen.49"/>). In AC15 a number
of t-norms was tested as replacement for VSL's growth rate function within a
highly simplified paleo-DA setting. In particular, it was found that the
product t-norm <inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:msub><mml:mi>g</mml:mi><mml:mrow><mml:mi mathvariant="normal">T</mml:mi><mml:mo>∧</mml:mo><mml:mi mathvariant="normal">M</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msub><mml:mo>⋅</mml:mo><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> might significantly improve the performance of the
time-averaged EnKF technique. Accordingly, beside the minimum t-norm, we
also consider the product growth response VSL-Prod in this paper:

                  <disp-formula id="Ch1.E15" content-type="numbered"><mml:math id="M73" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi>G</mml:mi><mml:mi mathvariant="normal">PROD</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msub><mml:mo>⋅</mml:mo><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:msub><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p>An important aspect of the product growth response VSL-Prod is the presence
of an additional growth limitation regime where T and M concurrently limit
tree-ring growth. This “co-limitation” regime allows a gradual transition
between temperature- and moisture-limited growth limitation regimes and
accordingly a progressive alternation of the recorded variable. Growth
co-limitation was initially recognized by <xref ref-type="bibr" rid="bib1.bibx54" id="text.50"/>, who called
attention to the limitations of the original formulation of the PLF due to
<xref ref-type="bibr" rid="bib1.bibx6" id="text.51"/>. Within the ecological research community, co-limitation
has been widely acknowledged as an crucial resource limitation phenomenon
<xref ref-type="bibr" rid="bib1.bibx23" id="paren.52"/>, with abundant observational support both in terrestrial
<xref ref-type="bibr" rid="bib1.bibx46" id="paren.53"/> and aquatic <xref ref-type="bibr" rid="bib1.bibx51" id="paren.54"/> environments.
Interestingly, within the vegetation modeling community the original PLF
formulation is still the predominant approach to model photosynthesis
<xref ref-type="bibr" rid="bib1.bibx70" id="paren.55"/>.</p>
</sec>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Experimental design</title>
      <p>Following the rationale used in the experiments of AC15, we conducted a set
of DA experiments using the Simplified Parameterizations, primitivE-Equation DYnamics (SPEEDY) model <xref ref-type="bibr" rid="bib1.bibx44" id="paren.56"/> as a dynamical system
and the VSL forward model as an observation operator. The time-averaged state of the
atmosphere is estimated via the EnKF approach of <xref ref-type="bibr" rid="bib1.bibx14" id="text.57"/>. In the
following, we describe in detail each of the components of our experimental
setting.</p>
<sec id="Ch1.S2.SS3.SSS1">
  <title>Atmospheric general circulation model</title>
      <p>The SPEEDY model
<xref ref-type="bibr" rid="bib1.bibx44" id="paren.58"/> is an intermediate-complexity atmospheric general
circulation model (AGCM) comprising a spectral dynamical core and a set of
simplified physical parameterizations, based on the same principles as
state-of-the-art AGCM but tailored to work with just a few vertical levels.
Regarding the interaction with the ocean, SPEEDY offers two possible
configurations: (i) <italic>prescribed ocean</italic> – sea surface temperature is
directly imposed as forcing; (ii) <italic>slab ocean</italic> – the atmospheric
model is coupled to a slab ocean model (<inline-formula><mml:math id="M74" display="inline"><mml:mi>q</mml:mi></mml:math></inline-formula> flux adjusted mixed layer model)
forced by climatological ocean dynamics. Despite its low resolution and the
relatively low complexity of its parameterizations, SPEEDY still captures
many observed global climate features in a realistic way, while its
computational cost is at least 1 order of magnitude lower than the one of
sophisticated state-of-the-art AGCMs at the same horizontal resolution
<xref ref-type="bibr" rid="bib1.bibx44" id="paren.59"/>. The latter makes SPEEDY especially suitable for studies
involving long ensemble runs, like the ones necessary for this study.</p>
</sec>
<sec id="Ch1.S2.SS3.SSS2">
  <title>DA technique</title>
      <p>The SPEEDY model was embedded by <xref ref-type="bibr" rid="bib1.bibx42" id="text.60"/> into the
SPEEDY-LETKF framework, which offers a parallel implementation of a local
ensemble transform Kalman filter (LETKF) <xref ref-type="bibr" rid="bib1.bibx28" id="paren.61"/>. Among the
different types of EnKF, LETKF is particularly promising for high-resolution models given that the calculation of the analysis for a particular
grid point requires only the information of the neighboring observations.
Therefore, LETKF offers outstanding scalability properties. SPEEDY-LETKF is
an open-source software which has already been used for several DA
studies <xref ref-type="bibr" rid="bib1.bibx34 bib1.bibx43 bib1.bibx35 bib1.bibx50 bib1.bibx2" id="paren.62"/>. Here,
SPEEDY-LETKF was extended to allow the assimilation of pseudo-TRW
observations by means of either online or off-line time-averaged EnKF
methods.</p>
      <p>For the experiments presented in this paper, we employed ensembles of 24
members due to computational constraints. We used a constant multiplicative
inflation of 1 % after the ensemble update and R localization via the
following formula:

                  <disp-formula id="Ch1.E16" content-type="numbered"><mml:math id="M75" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">loc</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi>R</mml:mi><mml:mo>⋅</mml:mo><mml:mi>exp⁡</mml:mi><mml:mo mathsize="1.1em">(</mml:mo><mml:msup><mml:mfenced close=")" open="("><mml:msub><mml:mi>r</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mfenced close=")" open="("><mml:msub><mml:mi>r</mml:mi><mml:mi mathvariant="normal">v</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="normal">v</mml:mi></mml:msub></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo mathsize="1.1em">)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

            where <inline-formula><mml:math id="M76" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mi mathvariant="normal">v</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> stand for the horizontal and vertical
distances, respectively. Their corresponding scaling parameters were set to
the values of <inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">500</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M79" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="normal">v</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.4</mml:mn><mml:mi>ln⁡</mml:mi><mml:mi>p</mml:mi></mml:mrow></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p>Schematic of a typical observation system simulation experiment
(OSSE) with ensemble online (with cycling) and
off-line (no-cycling) DA
methods. <inline-formula><mml:math id="M81" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> designates the time axis and <inline-formula><mml:math id="M82" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>(<inline-formula><mml:math id="M83" display="inline"><mml:mi>Y</mml:mi></mml:math></inline-formula>) denotes the model state
(observation) space. Boxes with sharp (rounded) corners represent data
(processes). Red (green) vertical bars indicate the <italic>forecast</italic>
(<italic>analysis</italic>) spread. Vertical dotted lines represent the assimilation
steps.</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://cp.copernicus.org/articles/13/545/2017/cp-13-545-2017-f01.pdf"/>

          </fig>

</sec>
<sec id="Ch1.S2.SS3.SSS3">
  <title>Numerical experiments</title>
      <p>We performed a set of Observation System Simulation Experiments (OSSEs) (see
Fig. <xref ref-type="fig" rid="Ch1.F1"/>), consisting of (i) a single model trajectory
<inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">x</mml:mi><mml:mi mathvariant="normal">Nature</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>, referred to as “true” run or “nature” run,
that is used as a prediction target, (ii) pseudo-observations created by
applying the observation operator to <inline-formula><mml:math id="M85" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">x</mml:mi><mml:mi mathvariant="normal">Nature</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> and adding
simulated observational noise, (iii) an observationally constrained ensemble
run <inline-formula><mml:math id="M86" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">DA</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>, where the pseudo-observations are assimilated,
and (iv) a free ensemble run <inline-formula><mml:math id="M87" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">Free</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>, where no
observations are assimilated and then the ensemble just freely evolves under
the action of the model dynamics. <inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">Free</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> is intended to
provide a benchmark of performance, against which it is possible to assess
the added value of the DA scheme.</p>
      <p>Initially, a 1-year-long spin-up run is performed starting from 1 January
1860. Afterwards, the final state of this model trajectory is used as the
initial condition for a 150-year-long nature (“true”) run. The ensemble
runs with and without DA are identically initialized from a set of states
gathered from the last 2 months of the spin-up run (lagged 2-day
initialization). Note that the nature run and the different ensemble runs are
generated with the same time-varying forcing fields. Regarding the
atmosphere–ocean coupling, we used SPEEDY's slab ocean configuration,
motivated by the fact that the slow variability in the slab ocean may lend
predictability to the atmosphere. In these conditions, the online DA
technique should have higher chances to outperform the off-line technique.</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S2.SS3.SSS4">
  <title>Observation generation</title>
      <p>Pseudo-TRW observations are produced following VSL's formulation plus a
final white noise addition step, in which random draws from a Gaussian
distribution are imposed on the time-averaged observations. Noise levels are
assessed by means of the signal-to-noise ratio (SNR), given by the ratio of
the standard deviation of the unpolluted pseudo-TRW observations to the
standard deviation of the additive white noise. Most of the results reported
in Sect. <xref ref-type="sec" rid="Ch1.S3"/> correspond to the optimistic value SNR <inline-formula><mml:math id="M89" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula>,
with the exception of the last sensitivity study, which analyzes the
dependency on observational noise levels. Regarding the geographical
distribution of the observations, we place a pseudo-TRW chronology at every
grid box where at least one actual TRW chronology from the database of
<xref ref-type="bibr" rid="bib1.bibx8" id="text.63"/> is present. This strategy yields a realistic
observational network comprising 257 stations (see Fig. <xref ref-type="fig" rid="Ch1.F2"/>).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p>Station set resembling real TRW network from
<xref ref-type="bibr" rid="bib1.bibx8" id="text.64"/>.</p></caption>
            <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://cp.copernicus.org/articles/13/545/2017/cp-13-545-2017-f02.pdf"/>

          </fig>

      <p>Concerning the configuration of the observation operator, we focus our study
on the role of the growth rate function by configuring VSL in such a way that
no thresholded response takes place. This is done by setting the upper and
lower response thresholds to the maximum (minimum) values during the nature
(true) run so that the response functions reduce to linear rescaling
operators. We consider three different growth rate functions leading to three
VSL configurations: (i) VSL-T, where the growth rate is directly given by the
growth response to temperature (<inline-formula><mml:math id="M90" display="inline"><mml:mrow><mml:msub><mml:mi>G</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>g</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>; (ii) VSL-Min,
where the original “minimum” t-norm <inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:msub><mml:mi>G</mml:mi><mml:mi mathvariant="normal">MIN</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is used; and
(iii) VSL-Prod, where the FL-based “product” t-norm <inline-formula><mml:math id="M92" display="inline"><mml:mrow><mml:msub><mml:mi>G</mml:mi><mml:mi mathvariant="normal">PROD</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is
utilized. Note that within the setup described above, VSL-T generates purely
temperature-limited pseudo-chronologies, while VSL-Min and VSL-Prod generate
mixed ones, where temperature and soil moisture determine tree-ring growth
pace.</p>
      <p>Finally, respecting the soil moisture fields used to drive the VSL model, we
consider two options: (i) extracting soil moisture time series from the
climatological surface boundary conditions of the SPEEDY model and (ii) using
the precipitation and temperature output of SPEEDY as input for the leaky
bucket model (LBM)<fn id="Ch1.Footn1"><p>The LBM code was extracted from VSL v2_3
(<uri>ftp://ftp.ncdc.noaa.gov/pub/data/paleo/softlib/vs-lite/</uri>).</p></fn>
<xref ref-type="bibr" rid="bib1.bibx25" id="paren.65"/>, as it is normally done with the VSL model. Note that with
the first option, the time series obtained present only intra-annual
variability (yearly periodicity), while with the second option moisture time
series do exhibit interannual variations.</p>
</sec>
<sec id="Ch1.S2.SS3.SSS5">
  <title>Diagnostics</title>
      <p>Thanks to the availability of the truth model evolution for our OSSEs, the
forecast and analysis skill of the ensemble runs can be directly assessed.
Given the annual resolution of TRW chronologies, we study the filter
performance for yearly averaged values of near-surface temperatures. We focus
our analysis on near-surface temperature due to the larger error reduction in
this field as compared to other variables (e.g., humidity, <inline-formula><mml:math id="M93" display="inline"><mml:mi>u</mml:mi></mml:math></inline-formula> wind,
<inline-formula><mml:math id="M94" display="inline"><mml:mi>v</mml:mi></mml:math></inline-formula> wind) when DA is applied. The behavior of ensemble runs is monitored by
means of the root mean square error (RMSE) for the ensemble means. The
results are shown as (1) time series of globally averaged temperature RMSE,
(2) histograms of these time series and (3) maps of time-averaged (150 years)
temperature RMSEs.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results</title>
<sec id="Ch1.S3.SS1">
  <title>Unconstrained ensemble run</title>
      <p>An AGCM is an example of a nonautonomous system, and accordingly the
evolution of its state is determined by both the atmospheric dynamics and the
external forcing. The influences of these two distinct factors can be
disentangled to some extent by considering atmospheric variability to be a
superposition of an internal component, caused by the intrinsic dynamics, and
an external one, resulting from the variations in the boundary conditions
<xref ref-type="bibr" rid="bib1.bibx13" id="paren.66"/>. Under this assumption, internal and external variability
can be separated by way of a free ensemble run, using the ensemble mean as an
estimate of the forced variability and the ensemble spread as an estimate of
the internal variability. Following this train of thought, Fig. <xref ref-type="fig" rid="Ch1.F3"/>a
shows the magnitude of the yearly internal variability in near-surface
temperature. Geographical regions around the Equator present negligible
yearly internal variability, which can be explained by the fact that these
areas are dominated by the daily cycle, and accordingly the 1-year-long
averaging strongly attenuates their internal variability. On the other hand,
maximum spread values occur at high latitudes around <inline-formula><mml:math id="M95" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>70<inline-formula><mml:math id="M96" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>. These
yearly internal-variability maxima can be related to planetary-scale patterns
fluctuating over timescales longer than 1 year, such as the “annular modes”
<xref ref-type="bibr" rid="bib1.bibx58" id="paren.67"/> and displacements of the jet stream
<xref ref-type="bibr" rid="bib1.bibx69" id="paren.68"/>. Regarding the error of the free ensemble run,
Fig. <xref ref-type="fig" rid="Ch1.F3"/>b shows that the RMSE maxima clearly coincide with the
internal-variability maxima, given that quantities without internal
variability can be well described by an ensemble run without DA. From that,
it becomes clear that in our setting, DA can only be beneficial to estimate
quantities displaying significant yearly internal variability.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <title>Assimilating linear univariate time-averaged observations</title>
      <p>In order to focus on the comparison between online and off-line DA
techniques, we first consider the assimilation of temperature-limited
pseudo-chronologies produced with VSL-T. Note that this observation operator
generates linear univariate time-averaged observations, and accordingly the
time-averaged EnKF must be in good conditions to operate, given that no
nonlinearities are present in the observation operator.</p>
      <p>Figure <xref ref-type="fig" rid="Ch1.F4"/>b and c show how the assimilation effectively reduces the
error of the analysis for both online and off-line methods. All areas
adjacent to the observational network show low RMSE values; however, it is
important to highlight that stations located in areas of strong yearly
internal variability are more efficient than the others at reducing the error
of the analysis quantities. An example of this is the chronologies placed in
Alaska, where RMSE reductions of up to 1.5<inline-formula><mml:math id="M97" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> take place. Conversely,
stations situated in regions with weak yearly internal variability do no lead
to significant error reductions, as is the case of the chronologies located
in the Himalaya area, where SPEEDY presents no significant yearly temperature
internal variability to be constrained via DA. Therefore, we claim that the
error reduction for analysis quantities is modulated by the magnitude of the
yearly internal variability at a specific site.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p>Yearly near-surface temperature spread <bold>(a)</bold> and
RMSE <bold>(b)</bold> for the free ensemble run.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://cp.copernicus.org/articles/13/545/2017/cp-13-545-2017-f03.pdf"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><caption><p>Yearly near-surface temperature RMSE for the ensemble run
constrained by VSL-T pseudo-TRW observations. <bold>(a)</bold> Online forecast
quantities, <bold>(b)</bold> online analysis quantities and
<bold>(c)</bold> off-line analysis quantities</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://cp.copernicus.org/articles/13/545/2017/cp-13-545-2017-f04.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p>Global near-surface temperature RMSE for the forecast ensemble run
constrained by VSL-T pseudo-TRW observation (red) and the free ensemble run
(black) for the analysis of online (green) and off-line (blue) DA. Panel
<bold>(a)</bold> shows time series and panel <bold>(b)</bold> their corresponding histograms. Horizontal
lines represent the mean values.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://cp.copernicus.org/articles/13/545/2017/cp-13-545-2017-f05.pdf"/>

        </fig>

      <?xmltex \floatpos{p}?><fig id="Ch1.F6"><caption><p>Yearly near-surface temperature RMSE for the analysis of the
ensemble runs using off-line DA
and climatological soil moisture. <bold>(a)</bold> Assimilating VSL-T pseudo-TRW
observations, <bold>(b)</bold> assimilating VSL-Min pseudo-TRW observations and
<bold>(c)</bold> assimilating VSL-Prod pseudo-TRW observations</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://cp.copernicus.org/articles/13/545/2017/cp-13-545-2017-f06.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p>Global near-surface temperature RMSE for the off-line analysis of
the ensemble runs constrained by VSL-Min (red), VSL-Prod (green) and VSL-T
(blue) pseudo-TRW observations. Climatological soil moisture is used to drive
the VSL model. Horizontal lines represent the mean values. Panel <bold>(b)</bold>
shows the histograms of the time series.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://cp.copernicus.org/articles/13/545/2017/cp-13-545-2017-f07.pdf"/>

        </fig>

      <?xmltex \floatpos{p}?><fig id="Ch1.F8"><caption><p>Global yearly near-surface temperature RMSE box plots for the free
ensemble run forecast (<italic>free</italic>) and the analysis of the off-line DA
runs using VSL-Min observation operator and climatological soil moisture
(<sc>DA_Min</sc>), VSL-Min observation operator and leaky bucket model
(<sc>DA_Min_LBM</sc>), VSL-Prod observation operator and climatological
soil moisture (<sc>DA_Prod</sc>), and VSL-Prod observation operator and
leaky bucket model (<sc>DA_Prod_LBM</sc>).</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://cp.copernicus.org/articles/13/545/2017/cp-13-545-2017-f08.pdf"/>

        </fig>

      <?xmltex \floatpos{p}?><fig id="Ch1.F9"><caption><p>Averaged global yearly near-surface temperature RMSE for the
analysis of the ensemble run with off-line DA, VSL-Min observation operator and different signal-to-noise
ratios. The green star shows the corresponding value for the free
run.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://cp.copernicus.org/articles/13/545/2017/cp-13-545-2017-f09.pdf"/>

        </fig>

      <p>On the other hand, online forecast quantities do not present significant
error reductions, and consequently the online time-averaged EnKF appears to
work under the off-line regime. This situation can be seen in
Fig. <xref ref-type="fig" rid="Ch1.F4"/>a, which presents a strong resemblance with Fig. <xref ref-type="fig" rid="Ch1.F3"/>b,
corresponding to the RMSE of the free ensemble run. Furthermore, looking at
global RMSE time series (Fig. <xref ref-type="fig" rid="Ch1.F5"/>), it is evident that the errors for
the online technique increase with time, as opposed to the corresponding
off-line quantities, which presented stable behavior all along the running
time interval. Overall the off-line DA methodology leads to lower error
levels on the global scale. The existence of this upward trend for online errors
might be attributed to an undesired effect arising from the re-initialization
of the ensemble after each assimilation step. For all our online DA
experiments we observed the aforementioned lack of forecast skill.
Consequently, for the rest of this section we will focus on the off-line DA
technique.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <title>Assimilating mixed TRW chronologies</title>
      <p>Here we analyze the role of the structure of the growth rate function in the
performance of the off-line DA scheme. Given that both <inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:msub><mml:mi>G</mml:mi><mml:mi mathvariant="normal">Min</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:msub><mml:mi>G</mml:mi><mml:mi mathvariant="normal">Prod</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are nonlinear functions, their use within the observation
operator degrades the operation of the time-averaged EnKF, as it is
illustrated by Fig. <xref ref-type="fig" rid="Ch1.F6"/>. Some areas displaying very low RMSE values
for VSL-T, such as Alaska, Siberia and central Asia, present considerably
higher error levels when VSL-Min or VSL-Prod are utilized. This loss of skill
to nonlinearities in the observation operator is also apparent in the global
RMSE time series, as can be seen in Fig. <xref ref-type="fig" rid="Ch1.F7"/>, where VSL-T clearly
outperforms the other two observation operators.</p>
      <p>Regarding the dependency on the representation of the PLF, Fig. <xref ref-type="fig" rid="Ch1.F6"/>
shows that the use of VSL-Prod leads to considerably lower RMSE values in
central Europe and the east coast of the United States. This edge of VSL-Prod
over VSL-Min is also observed on the global scale, as can be seen in
Fig. <xref ref-type="fig" rid="Ch1.F7"/>. These results concur with the ones of AC15, where in a
highly simplified paleo-DA setting the use of VSL-Prod instead of VSL-Min
appeared also beneficial to the performance of the time-averaged EnKF
technique. Concerning the soil moisture fields, Fig. <xref ref-type="fig" rid="Ch1.F8"/> shows how
using the soil moisture calculated by the LBM reduces the error levels of
both VSL-Min and VSL-Prod DA runs. However, these improvements in filter
performance are more significant for VSL-Min than for VSL-Prod.</p>
      <p>Finally, respecting the dependency of the filter performance on the
observational noise levels, Fig. <xref ref-type="fig" rid="Ch1.F9"/> shows how the off-line DA scheme
is considerably effective for SNR values higher than <inline-formula><mml:math id="M100" display="inline"><mml:mn mathvariant="normal">1</mml:mn></mml:math></inline-formula>. Increasing further
the observational noise (reducing SNR) leads to a fast increase for the
averaged global RMSE curve, which reaches the error levels of a simulation
without DA (free ensemble run) at SNR <inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">0.03</mml:mn></mml:mrow></mml:math></inline-formula>.</p>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <title>Conclusions</title>
      <p>Using the time-averaged EnKF methodology and a
process-based proxy forward model (VSL), we assimilated pseudo-TRW
chronologies in an AGCM (SPEEDY). Using a set of perfect model experiments we
studied two different aspects of the paleo-DA problem: (i) the onset of the
off-line regime in the assimilation of observations averaged during long time
periods and (ii) the impact of a nonlinear observation operator on the
performance of EnKF-based time-averaged DA approaches.</p>
      <p>Our online DA experiments in general showed no forecasting skill, and accordingly they appear to operate under the off-line regime. Moreover, they
exhibited a detrimental increasing error trend not present for our
experiments with off-line DA schemes, where no re-initialization of the model
was performed. In these conditions, the off-line time-averaged EnKF appears
to outperform its online counterpart. This result complements the studies of
<xref ref-type="bibr" rid="bib1.bibx29" id="text.69"/> and <xref ref-type="bibr" rid="bib1.bibx48" id="text.70"/>, where the off-line regime was
observed to emerge within a DA setting comprising the time-averaged EnKF and
a quasi-geostrophic atmospheric jet model. From our point of view, the
off-line regime can arise either from the dynamical model or from the DA
scheme. Regarding the dynamical model, the main reason for losing forecast
skill is that the period between consecutive observations considerably
exceeds the predictability horizon of the model, and accordingly the ensemble
forecast completely forgets the observational information assimilated at the
analysis steps. For SPEEDY, due to its purely atmospheric nature, the 1-year
averaging period of TRW chronologies appears to be considerably longer than
its dynamical timescales. Therefore, the appearance of the off-line regime
is to be expected. On the other hand, for more realistic climate models,
there is already evidence of processes with timescales longer than 1 year
<xref ref-type="bibr" rid="bib1.bibx55" id="paren.71"/>. Examples of these sources of slow variability are (i) the
“annular modes” <xref ref-type="bibr" rid="bib1.bibx58" id="paren.72"/>, which strongly affect climatic
conditions in high latitudes, (ii) the latitudinal oscillation of the cell
structure, which influences the position of the jet streams, and (iii) the
oscillations of the Intertropical Convergence Zone (ITCZ), which greatly
impacts humidity in several parts of the globe <xref ref-type="bibr" rid="bib1.bibx24" id="paren.73"/>, as well as the El Niño–Southern Oscillation (ENSO), which affects the climate of a large
portion of the tropical and subtropical areas. Consequently, we consider that
for more realistic paleo-DA settings using more comprehensive Earth system
models, the off-line regime is less likely to arise. Regarding the DA scheme,
a possible reason for the appearance of the off-line regime is the time-averaged
update strategy <xref ref-type="bibr" rid="bib1.bibx14" id="paren.74"/>, which assumes complete decorrelation
between time-averaged and instantaneous variables. This condition might not
be satisfied by SPEEDY, and accordingly the estimation of instantaneous
quantities might be badly affected. Another limitation of the time-averaged
EnKF is its reliance on Gaussianity. This assumption might be easily violated
in a climate model, for example by definite positive quantities such as
humidity. Consequently non-Gaussianity might be also one of the culprits of
the onset of the off-line regime in our experiments.</p>
      <p>Concerning the influence of nonlinearities in the observation operator, the
performance of the off-line time-averaged EnKF appeared to be significantly
sensitive to the selection of the t-norm used to represent the PLF. In our
experiments, the product t-norm outperformed the original minimum t-norm, as
previously observed for a two-scale <xref ref-type="bibr" rid="bib1.bibx37" id="normal.75"/> model in AC15.
<xref ref-type="bibr" rid="bib1.bibx61" id="text.76"/> described trees as fundamentally lossy<fn id="Ch1.Footn2"><p>This
adjective is currently used in information technology to designate
data encoding methods that lead to information loss from the original version
for the sake of reducing the amount of data needed to store the content.</p></fn>
recorders of climate, due to the integrated nature of the information
contained in them and the standardization process used to minimize the
non-climatic effects on growth. In the same vein, we argue that the “abrupt
shifting” of the recorded variable (temperature or moisture) – implied by the
minimum function used in VSL's original formulation – might constitute an
additional source of lossiness, which can be reduced by resorting to an FL-based
representation of the PLF. In particular, for the product t-norm, the
existence of an additional co-limitation regime makes a smoother shifting
of the recorded variable possible. As a cautionary remark, we want to highlight
that the pseudo-observations assimilated in our experiments present several
important limitations: (i) the thresholded response of trees to temperature
and moisture was not considered in order to focus on the role of the growth
rate function; (ii) VSL's parameters were set in a completely homogeneous
fashion for all the observational stations, whereas actual TRW networks are
strongly heterogeneous, comprising chronologies generated under highly
dissimilar growth limitation regimes. More realistic TRW assimilation
experiments will probably have to address these issues as well as the
necessity of considering model errors by conducting imperfect model OSSEs.</p>
      <p>Finally, we want to mention that the translation of VSL into the FL language
suggests other possible extensions for VSL. (i) Growth response functions can
be generalized using the extensive knowledge on membership functions gathered
in the FL research community <xref ref-type="bibr" rid="bib1.bibx45" id="paren.77"/>. In particular, it might be
possible to tailor the shape of the growth response functions so as to
optimize the performance of VSL regarding the particular application at hand,
e.g., Gaussian DA, as was done in this paper. (ii) Additional limiting
factors, e.g., <inline-formula><mml:math id="M102" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration, can be easily incorporated into the
fuzzy inference system by adding new rules designed to express expert
knowledge about the influence of these factors on tree growth. (iii) The
intrinsic uncertainty regarding VSLs parameters might be taken into account
via the emerging theory of stochastic FL <xref ref-type="bibr" rid="bib1.bibx38" id="paren.78"/>. Furthermore,
this ability of the FL approach to efficiently simulate complex processes
involving vaguely understood mechanisms can be used in the development of new
proxy forward models as well as in the extension of the existing ones.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p>No data sets were used in this article.</p>
  </notes><notes notes-type="competinginterests">

      <p>The authors declare that they have no conflict of
interest.</p>
  </notes><ack><title>Acknowledgements</title><p>This work was supported by the German Federal Ministry of Education and Research
(BMBF) as part of the Research for Sustainable Development initiative (FONA;
<uri>www.fona.de</uri>) through the PalMod project (FKZ: 01LP1511A). The computational resources were
made available by the High-Performance Computing Center (ZEDAT) at Freie
Universität Berlin and the German Climate Computing Center (DKRZ). Walter
Acevedo wishes to acknowledge partial financial support by the Helmholtz
graduate research school GeoSim.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: H. Goosse  <?xmltex \hack{\newline}?>
Reviewed by: two anonymous referees</p></ack><ref-list>
    <title>References</title>

      <ref id="bib1.bibx1"><label>Acevedo et al.(2015)</label><mixed-citation>Acevedo, W., Reich, S., and Cubasch, U.: Towards the assimilation of
tree-ring-width records using ensemble Kalman filtering techniques, Clim.
Dynam., 46, 1909–1920, <ext-link xlink:href="http://dx.doi.org/10.1007/s00382-015-2683-1" ext-link-type="DOI">10.1007/s00382-015-2683-1</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx2"><label>Amezcua et al.(2014)</label><mixed-citation>Amezcua, J., Ide, K., Kalnay, E., and Reich, S.: Ensemble transform
Kalman-Bucy filters, Q. J.Roy. Meteor. Soc., 140, 995–1004,
<ext-link xlink:href="http://dx.doi.org/10.1002/qj.2186" ext-link-type="DOI">10.1002/qj.2186</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx3"><label>Annan and Hargreaves(2012)</label><mixed-citation>Annan, J. D. and Hargreaves, J. C.: Identification of climatic state with
limited proxy data, Clim. Past, 8, 1141–1151, <ext-link xlink:href="http://dx.doi.org/10.5194/cp-8-1141-2012" ext-link-type="DOI">10.5194/cp-8-1141-2012</ext-link>,
2012.</mixed-citation></ref>
      <ref id="bib1.bibx4"><label>Barkmeijer et al.(2003)</label><mixed-citation>Barkmeijer, J., Iversen, T., and Palmer, T. N.: Forcing singular vectors and
other sensitive model structures, Q. J. Roy. Meteor. Soc., 129, 2401–2423,
<ext-link xlink:href="http://dx.doi.org/10.1256/qj.02.126" ext-link-type="DOI">10.1256/qj.02.126</ext-link>, 2003.</mixed-citation></ref>
      <ref id="bib1.bibx5"><label>Bhend et al.(2012)</label><mixed-citation>Bhend, J., Franke, J., Folini, D., Wild, M., and Brönnimann, S.: An
ensemble-based approach to climate reconstructions, Clim. Past, 8, 963–976,
<ext-link xlink:href="http://dx.doi.org/10.5194/cp-8-963-2012" ext-link-type="DOI">10.5194/cp-8-963-2012</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx6"><label>Blackman(1905)</label><mixed-citation>
Blackman, F. F.: Optima and limiting factors, Ann. Bot., 19, 281–295, 1905.</mixed-citation></ref>
      <ref id="bib1.bibx7"><label>Boucher et al.(2014)</label><mixed-citation>Boucher, É., Guiot, J., Hatté, C., Daux, V., Danis, P.-A., and
Dussouillez, P.: An inverse modeling approach for tree-ring-based climate
reconstructions under changing atmospheric <inline-formula><mml:math id="M103" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations,
Biogeosciences, 11, 3245–3258, <ext-link xlink:href="http://dx.doi.org/10.5194/bg-11-3245-2014" ext-link-type="DOI">10.5194/bg-11-3245-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx8"><label>Breitenmoser et al.(2014)</label><mixed-citation>Breitenmoser, P., Brönnimann, S., and Frank, D.: Forward modelling of
tree-ring width and comparison with a global network of tree-ring
chronologies, Clim. Past, 10, 437–449, <ext-link xlink:href="http://dx.doi.org/10.5194/cp-10-437-2014" ext-link-type="DOI">10.5194/cp-10-437-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx9"><label>Brönnimann(2011)</label><mixed-citation>
Brönnimann, S.: Towards a paleoreanalysis?, ProClim-Flash, 51, p. 16, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx10"><label>Burgers et al.(1998)</label><mixed-citation>Burgers, G., van Leeuwen, P. J., and Evensen, G.: Analysis scheme in the
ensemble Kalman filter, Mon. Weather Rev., 126, 1719–1724,
<ext-link xlink:href="http://dx.doi.org/10.1029/94JC00572" ext-link-type="DOI">10.1029/94JC00572</ext-link>, 1998.</mixed-citation></ref>
      <ref id="bib1.bibx11"><label>Crucifix(2012)</label><mixed-citation>Crucifix, M.: Traditional and novel approaches to palaeoclimate modelling,
Quaternary Sci. Rev., 57, 1–16, <ext-link xlink:href="http://dx.doi.org/10.1016/j.quascirev.2012.09.010" ext-link-type="DOI">10.1016/j.quascirev.2012.09.010</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx12"><label>Dee et al.(2016)</label><mixed-citation>Dee, S. G., Steiger, N. J., Emile-Geay, J., and Hakim, G. J.: On the utility
of proxy system models for estimating climate states over the common era,
J. Adv. Model. Earth Syst., 8, 1164–1179, <ext-link xlink:href="http://dx.doi.org/10.1002/2016MS000677" ext-link-type="DOI">10.1002/2016MS000677</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx13"><label>Deza et al.(2014)Deza, Masoller, and Barreiro</label><mixed-citation>Deza, J. I., Masoller, C., and Barreiro, M.: Distinguishing the effects of
internal and forced atmospheric variability in climate networks, Nonlin.
Processes Geophys., 21, 617–631, <ext-link xlink:href="http://dx.doi.org/10.5194/npg-21-617-2014" ext-link-type="DOI">10.5194/npg-21-617-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx14"><label>Dirren and Hakim(2005)</label><mixed-citation>Dirren, S. and Hakim, G. J.: Toward the assimilation of time-averaged
observations, Geophys. Res. Lett., 32, L04804, <ext-link xlink:href="http://dx.doi.org/10.1029/2004GL021444" ext-link-type="DOI">10.1029/2004GL021444</ext-link>,
2005.</mixed-citation></ref>
      <ref id="bib1.bibx15"><label>Dubinkina and Goosse(2013)</label><mixed-citation>Dubinkina, S. and Goosse, H.: An assessment of particle filtering methods and
nudging for climate state reconstructions, Clim. Past, 9, 1141–1152,
<ext-link xlink:href="http://dx.doi.org/10.5194/cp-9-1141-2013" ext-link-type="DOI">10.5194/cp-9-1141-2013</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx16"><label>Dubinkina et al.(2011)</label><mixed-citation>Dubinkina, S., Goosse, H., Sallaz-Damaz, Y., Crespin, E., and Crucifix, M.:
Testing a particle filter to reconstruction climate over the past centuries,
Int. J. Bifurcat. Chaos, 21, 3611–3618, <ext-link xlink:href="http://dx.doi.org/10.1142/S0218127411030763" ext-link-type="DOI">10.1142/S0218127411030763</ext-link>,
2011.</mixed-citation></ref>
      <ref id="bib1.bibx17"><label>Evans et al.(2013)</label><mixed-citation>Evans, M. N., Tolwinski-Ward, S. E., Thompson, D. M., and Anchukaitis, K. J.:
Applications of proxy system modeling in high resolution paleoclimatology,
Quaternary Sci. Rev., 76, 16–28, <ext-link xlink:href="http://dx.doi.org/10.1016/j.quascirev.2013.05.024" ext-link-type="DOI">10.1016/j.quascirev.2013.05.024</ext-link>,
2013.</mixed-citation></ref>
      <ref id="bib1.bibx18"><label>Evensen(1994)</label><mixed-citation>Evensen, G.: Sequential data assimilation with a nonlinear quasi-geostrophic
model using Monte Carlo methods to forecast error statistics, J. Geophys.
Res., 99, 10143–10162, <ext-link xlink:href="http://dx.doi.org/10.1029/94JC00572" ext-link-type="DOI">10.1029/94JC00572</ext-link>, 1994.</mixed-citation></ref>
      <ref id="bib1.bibx19"><label>Fritts(1976)</label><mixed-citation>
Fritts, H. C.: Tree rings and climate, Academic Press, New York, 1976.</mixed-citation></ref>
      <ref id="bib1.bibx20"><label>Hakim et al.(2013)</label><mixed-citation>Hakim, G., Annan, J., Broennimann, S., Crucifix, M., Edwards, T., Goosse, H.,
Paul, A., van der Schrier, G., and Widmann, M.: Overview of data assimilation
methods, PAGES news, 21, 2 pp., 2013.
 </mixed-citation></ref><?xmltex \hack{\newpage}?>
      <ref id="bib1.bibx21"><label>Hakim et al.(2016)</label><mixed-citation>Hakim, G. J., Emile-Geay, J., Steig, E. J., Noone, D., Anderson, D. M.,
Tardif, R., Steiger, N., and Perkins, W. A.: The last millennium climate
reanalysis project: Framework and first results, J. Geophys. Res.-Atmos.,
121, 6745–6764, <ext-link xlink:href="http://dx.doi.org/10.1002/2016JD024751" ext-link-type="DOI">10.1002/2016JD024751</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx22"><label>Hamill(2006)</label><mixed-citation>Hamill, T. M.: Ensemble-based atmospheric data assimilation, in:
Predictability of Weather and Climate, edited by: Palmer, T. and Hagedorn,
R., Cambridge University Press, <ext-link xlink:href="http://dx.doi.org/10.1017/CBO9780511617652.007" ext-link-type="DOI">10.1017/CBO9780511617652.007</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx23"><label>Harpole et al.(2011)</label><mixed-citation>Harpole, W. S., Ngai, J. T., Cleland, E. E., Seabloom, E. W., Borer, E. T.,
Bracken, M. E., Elser, J. J., Gruner, D. S., Hillebrand, H., Shurin, J. B.,
and Smith, J. E.: Nutrient co-limitation of primary producer communities,
Ecol. Lett., 14, 852–862, <ext-link xlink:href="http://dx.doi.org/10.1111/j.1461-0248.2011.01651.x" ext-link-type="DOI">10.1111/j.1461-0248.2011.01651.x</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx24"><label>Holton and Hakim(2013)</label><mixed-citation>Holton, J. and Hakim, G. J.: An Introduction to Dynamic Meteorology, Academic
Press, <uri>http://books.google.de/books?id=hLQRAQAAIAAJ</uri>, last access:
15 May 2017, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx25"><label>Huang et al.(1996)</label><mixed-citation>Huang, J., van den Dool, H. M., and Georgarakos, K. P.: Analysis of
Model-Calculated Soil Moisture over the United States (1931–1993) and
Applications to Long-Range Temperature Forecasts, J. Climate, 9, 1350–1362,
<ext-link xlink:href="http://dx.doi.org/10.1175/1520-0442(1996)009&lt;1350:AOMCSM&gt;2.0.CO;2" ext-link-type="DOI">10.1175/1520-0442(1996)009&lt;1350:AOMCSM&gt;2.0.CO;2</ext-link>,
1996.</mixed-citation></ref>
      <ref id="bib1.bibx26"><label>Hughes and Ammann(2009)</label><mixed-citation>Hughes, M. and Ammann, C.: The future of the past – an earth system
framework for high resolution paleoclimatology: editorial essay, Climatic
Change, 94, 247–259, <ext-link xlink:href="http://dx.doi.org/10.1007/s10584-009-9588-0" ext-link-type="DOI">10.1007/s10584-009-9588-0</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx27"><label>Hughes et al.(2010)</label><mixed-citation>
Hughes, M., Guiot, J., and Ammann, C.: An emerging paradigm: Process-based
climate reconstructions, PAGES news, 18, 87–89, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx28"><label>Hunt et al.(2007)</label><mixed-citation>Hunt, B. R., Kostelich, E. J., and Szunyogh, I.: Efficient data assimilation
for spatiotemporal chaos: A local ensemble transform Kalman filter,
Physica D, 230, 112–126, <ext-link xlink:href="http://dx.doi.org/10.1016/j.physd.2006.11.008" ext-link-type="DOI">10.1016/j.physd.2006.11.008</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx29"><label>Huntley and Hakim(2010)</label><mixed-citation>Huntley, H. and Hakim, G.: Assimilation of time-averaged observations in a
quasi-geostrophic atmospheric jet model, Clim. Dynam., 35, 995–1009,
<ext-link xlink:href="http://dx.doi.org/10.1007/s00382-009-0714-5" ext-link-type="DOI">10.1007/s00382-009-0714-5</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx30"><label>Kalman(1960)</label><mixed-citation>
Kalman, R. E.: A New Approach to Linear Filtering and Prediction Problems,
J. Basic Eng.-T. ASME, 82, 35–45, 1960.</mixed-citation></ref>
      <ref id="bib1.bibx31"><label>Kalnay(2003)</label><mixed-citation>
Kalnay, E.: Atmospheric modeling, data assimilation, and predictability,
Cambridge University Press, 2003.</mixed-citation></ref>
      <ref id="bib1.bibx32"><label>Kurahashi-Nakamura et al.(2014)</label><mixed-citation>Kurahashi-Nakamura, T., Losch, M., and Paul, A.: Can sparse proxy data
constrain the strength of the Atlantic meridional overturning circulation?,
Geosci. Model Dev., 7, 419–432, <ext-link xlink:href="http://dx.doi.org/10.5194/gmd-7-419-2014" ext-link-type="DOI">10.5194/gmd-7-419-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx33"><label>Lahoz et al.(2010)</label><mixed-citation>Lahoz, W., Khattatov, B., and Menard, R.: Data Assimilation: Making Sense of
Observations, Springer, <uri>http://books.google.de/books?id=KivkFpthm1EC</uri>,
last access: 15 May 2017, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx34"><label>Li et al.(2009)h</label><mixed-citation>Li, H., Kalnay, E., Miyoshi, T., and Danforth, C. M.: Accounting for Model
Errors in Ensemble Data Assimilation, Mon. Weather Rev., 137, 3407–3419,
<ext-link xlink:href="http://dx.doi.org/10.1175/2009MWR2766.1" ext-link-type="DOI">10.1175/2009MWR2766.1</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx35"><label>Lien et al.(2013)Lien, Kalnay, and Miyoshi</label><mixed-citation>Lien, G.-Y., Kalnay, E., and Miyoshi, T.: Effective assimilation of global
precipitation: simulation experiments, Tellus A, 65, 19915,
<ext-link xlink:href="http://dx.doi.org/10.3402/tellusa.v65i0.19915" ext-link-type="DOI">10.3402/tellusa.v65i0.19915</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx36"><label>Lorenc(1986)</label><mixed-citation>Lorenc, A. C.: Analysis methods for numerical weather prediction, Q. J.Roy.
Meteor. Soc., 112, 1177–1194, <ext-link xlink:href="http://dx.doi.org/10.1002/qj.49711247414" ext-link-type="DOI">10.1002/qj.49711247414</ext-link>, 1986.</mixed-citation></ref>
      <ref id="bib1.bibx37"><label>Lorenz(1996)</label><mixed-citation>
Lorenz, E. N.: Predictability, a problem partly solved, in: Proceedings of
ECMWF Seminar on predictability, ECMWF, Reading, UK, 4–8 September 1995,
1–19, 1996.</mixed-citation></ref>
      <ref id="bib1.bibx38"><label>Luhandjula and Gupta(1996)</label><mixed-citation>Luhandjula, M K.. and Gupta, M. M.: On fuzzy stochastic optimization, Fuzzy
Set. Syst., 81, 47–55, <ext-link xlink:href="http://dx.doi.org/10.1016/0165-0114(95)00240-5" ext-link-type="DOI">10.1016/0165-0114(95)00240-5</ext-link>, 1996.</mixed-citation></ref>
      <ref id="bib1.bibx39"><label>Marchini(2011)</label><mixed-citation>
Marchini, A.: Modelling Ecological Processes with Fuzzy Logic Approaches, in:
Modelling Complex Ecological Dynamics, edited by: Jopp, F., Reuter, H., and
Breckling, B., Springer Berlin Heidelberg, 133–145, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx40"><label>Mathiot et al.(2013)</label><mixed-citation>Mathiot, P., Goosse, H., Crosta, X., Stenni, B., Braida, M., Renssen, H., Van
Meerbeeck, C. J., Masson-Delmotte, V., Mairesse, A., and Dubinkina, S.: Using
data assimilation to investigate the causes of Southern Hemisphere high
latitude cooling from 10 to 8 ka BP, Clim. Past, 9, 887–901,
<ext-link xlink:href="http://dx.doi.org/10.5194/cp-9-887-2013" ext-link-type="DOI">10.5194/cp-9-887-2013</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx41"><label>Matsikaris et al.(2015)</label><mixed-citation>Matsikaris, A., Widmann, M., and Jungclaus, J.: On-line and off-line data
assimilation in palaeoclimatology: a case study, Clim. Past, 11, 81–93,
<ext-link xlink:href="http://dx.doi.org/10.5194/cp-11-81-2015" ext-link-type="DOI">10.5194/cp-11-81-2015</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx42"><label>Miyoshi(2005)</label><mixed-citation>
Miyoshi, T.: Ensemble Kalman filter experiments with a primitive-equation
global model, PhD thesis, University of Maryland, College Park, 197 pp.,
2005.</mixed-citation></ref>
      <ref id="bib1.bibx43"><label>Miyoshi(2010)</label><mixed-citation>Miyoshi, T.: The Gaussian Approach to Adaptive Covariance Inflation and Its
Implementation with the Local Ensemble Transform Kalman Filter, Mon. Weather
Rev., 139, 1519–1535, <ext-link xlink:href="http://dx.doi.org/10.1175/2010MWR3570.1" ext-link-type="DOI">10.1175/2010MWR3570.1</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx44"><label>Molteni(2003)</label><mixed-citation>
Molteni, F.: Atmospheric simulations using a GCM with simplified physical
parametrizations. I: model climatology and variability in multi-decadal
experiments, Clim. Dynam., 20, 175–191, 2003.</mixed-citation></ref>
      <ref id="bib1.bibx45"><label>Nguyen et al.(2002)</label><mixed-citation>
Nguyen, H. T., Prasad, N. R., Walker, C. L., and Walker, E. A.: A First
Course in Fuzzy and Neural Control, 1 Edn., Chapman and Hall/CRC, 2002.</mixed-citation></ref>
      <ref id="bib1.bibx46"><label>Niinemets and Kull(2005)</label><mixed-citation>Niinemets, Ü. and Kull, K.: Co-limitation of plant primary productivity
by nitrogen and phosphorus in a species-rich wooded meadow on calcareous
soils, Acta Oecol., 28, 345–356, <ext-link xlink:href="http://dx.doi.org/10.1016/j.actao.2005.06.003" ext-link-type="DOI">10.1016/j.actao.2005.06.003</ext-link>, 2005.</mixed-citation></ref>
      <ref id="bib1.bibx47"><label>Paul and Schäfer-Neth(2005)</label><mixed-citation>Paul, A. and Schäfer-Neth, C.: How to combine sparse proxy data and coupled
climate models, Quaternary Sci. Rev., 24, 1095–1107,
<ext-link xlink:href="http://dx.doi.org/10.1016/j.quascirev.2004.05.010" ext-link-type="DOI">10.1016/j.quascirev.2004.05.010</ext-link>, 2005.</mixed-citation></ref>
      <ref id="bib1.bibx48"><label>Pendergrass et al.(2012)</label><mixed-citation>Pendergrass, A., Hakim, G., Battisti, D., and Roe, G.: Coupled Air-Mixed
Layer Temperature Predictability for Climate Reconstruction, J. Climate, 25,
459–472, <ext-link xlink:href="http://dx.doi.org/10.1175/2011JCLI4094.1" ext-link-type="DOI">10.1175/2011JCLI4094.1</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx49"><label>Reich and Cotter(2015)</label><mixed-citation>Reich, S. and Cotter, C.: Probabilistic Forecasting and Bayesian Data
Assimilation, in: Cambridge Texts in Applied Mathematics, Cambridge
University Press, <uri>https://books.google.de/books?id=xVpiCAAAQBAJ</uri>, last
access: 1 May 2017, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx50"><label>Ruiz et al.(2013)</label><mixed-citation>Ruiz, J. J., Pulido, M., and Miyoshi, T.: Estimating Model Parameters with
Ensemble-Based Data Assimilation: A Review, J. Meteorol. Soc. Jpn., Ser. II,
91, 79–99, <ext-link xlink:href="http://dx.doi.org/10.2151/jmsj.2013-201" ext-link-type="DOI">10.2151/jmsj.2013-201</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx51"><label>Saito et al.(2008)Saito, Goepfert, and Ritt</label><mixed-citation>
Saito, M. A., Goepfert, T. J., and Ritt, J. T.: Some thoughts on the concept
of colimitation: three definitions and the importance of bioavailability,
Limnol. Oceanogr., 53, 276–290, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx52"><label>Salski(2006)</label><mixed-citation>
Salski, A.: Ecological Applications of Fuzzy Logic, in: Ecological
Informatics, edited by: Recknagel, F., Springer Berlin Heidelberg, 3–14,
2006.</mixed-citation></ref>
      <ref id="bib1.bibx53"><label>Se(2009)</label><mixed-citation>
Se, Z.: Fuzzy Logic and Hydrological Modeling, CRC Press, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx54"><label>Singh and Lal(1935)</label><mixed-citation>
Singh, B. N. and Lal, K. N.: Limitations of Blackman's law of limiting
factors and Harder's concept of relative minimum as applied to
photosynthesis, Plant Physiol., 10, 245–268, 1935.</mixed-citation></ref>
      <ref id="bib1.bibx55"><label>Smith et al.(2012)</label><mixed-citation>Smith, D. M., Scaife, A. A., and Kirtman, B. P.: What is the current state of
scientific knowledge with regard to seasonal and decadal forecasting?,
Environ. Res. Lett., 7, 015602, <ext-link xlink:href="http://dx.doi.org/10.1088/1748-9326/7/1/015602" ext-link-type="DOI">10.1088/1748-9326/7/1/015602</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx56"><label>Steiger et al.(2014)</label><mixed-citation>Steiger, N., Hakim, G., Steig, E., Battisti, D., and Roe, G.: Assimilation of
Time-Averaged Pseudoproxies for Climate Reconstruction, J. Climate, 27,
426–441, <ext-link xlink:href="http://dx.doi.org/10.1175/JCLI-D-12-00693.1" ext-link-type="DOI">10.1175/JCLI-D-12-00693.1</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx57"><label>Talagrand(1997)</label><mixed-citation>
Talagrand, O.: Assimilation of observations, an introduction,
Journal-Meteorological Society of Japan Series 2, 75, 81–99, 1997.</mixed-citation></ref>
      <ref id="bib1.bibx58"><label>Thompson and Wallace(2000)</label><mixed-citation>Thompson, D. W. J. and Wallace, J. M.: Annular Modes in the Extratropical
Circulation. Part I: Month-to-Month Variability, J. Climate, 13, 1000–1016,
<ext-link xlink:href="http://dx.doi.org/10.1175/1520-0442(2000)013&lt;1000:AMITEC&gt;2.0.CO;2" ext-link-type="DOI">10.1175/1520-0442(2000)013&lt;1000:AMITEC&gt;2.0.CO;2</ext-link>,
2000.</mixed-citation></ref>
      <ref id="bib1.bibx59"><label>Tippett et al.(2003)</label><mixed-citation>Tippett, M. K., Anderson, J. L., Bishop, C. H., Hamill, T. M., and Whitaker,
J. S.: Ensemble Square Root Filters*, Mon. Weather Rev., 131, 1485–1490,
<ext-link xlink:href="http://dx.doi.org/10.1175/1520-0493(2003)131&lt;1485:ESRF&gt;2.0.CO;2" ext-link-type="DOI">10.1175/1520-0493(2003)131&lt;1485:ESRF&gt;2.0.CO;2</ext-link>, 2003.</mixed-citation></ref>
      <ref id="bib1.bibx60"><label>Tolwinski-Ward(2012)</label><mixed-citation>Tolwinski-Ward, S. E.: Inference on Tree-Ring Width and Paleoclimate Using a
Proxy Model of Intermediate Complexity, PhD thesis, The University of
Arizona, <uri>http://hdl.handle.net/10150/241975</uri>, last access: 22 May 2017,
2012.</mixed-citation></ref>
      <ref id="bib1.bibx61"><label>Tolwinski-Ward et al.(2014)</label><mixed-citation>Tolwinski-Ward, S. E, Tingley, M., Evans, M., Hughes, M., and Nychka, D.:
Probabilistic reconstructions of local temperature and soil moisture from
tree-ring data with potentially time-varying climatic response, Clim. Dynam.,
44, 791–806, <ext-link xlink:href="http://dx.doi.org/10.1007/s00382-014-2139-z" ext-link-type="DOI">10.1007/s00382-014-2139-z</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx62"><label>Tolwinski-Ward et al.(2011)</label><mixed-citation>Tolwinski-Ward, S. E., Evans, M. N., Hughes, M., and Anchukaitis, K. J.: An
efficient forward model of the climate controls on interannual variation in
tree-ring width, Clim. Dynam., 36, 2419–2439,
<ext-link xlink:href="http://dx.doi.org/10.1007/s00382-010-0945-5" ext-link-type="DOI">10.1007/s00382-010-0945-5</ext-link>, 2011.
</mixed-citation></ref><?xmltex \hack{\newpage}?>
      <ref id="bib1.bibx63"><label>Vaganov et al.(2006)</label><mixed-citation>Vaganov, E., Hughes, M., and Shashkin, A.: Growth Dynamics of Conifer Tree
Rings: Images of Past and Future Environments, in: Ecological studies,
Springer, New York, 183, 358 pp., <ext-link xlink:href="http://dx.doi.org/10.1007/3-540-31298-6" ext-link-type="DOI">10.1007/3-540-31298-6</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx64"><label>van der Schrier and Barkmeijer(2005)</label><mixed-citation>van der Schrier, G. and Barkmeijer, J.: Bjerknes' hypothesis on the coldness
during AD 1790–1820 revisited, Clim. Dynam., 25, 537–553,
<ext-link xlink:href="http://dx.doi.org/10.1007/s00382-005-0053-0" ext-link-type="DOI">10.1007/s00382-005-0053-0</ext-link>, 2005.</mixed-citation></ref>
      <ref id="bib1.bibx65"><label>Van Leeuwen et al.(2015)</label><mixed-citation>
Van Leeuwen, P. J., Cheng, Y., and Reich, S.: Nonlinear data assimilation,
Springer, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx66"><label>von Storch et al.(2000)</label><mixed-citation>
von Storch, H., Cubasch, U., González-Ruoco, J., Jones, J., Widmann, M.,
and Zorita, E.: Combining paleoclimatic evidence and GCMs by means of data
assimilation through upscaling and nudging (datun), in: Proceedings of the
11th Symposium on Global Change Studies, AMS, Long Beach, CA, USA,
9–14 January 2000, 28–31, 2000.</mixed-citation></ref>
      <ref id="bib1.bibx67"><label>Whitaker et al.(2009)</label><mixed-citation>Whitaker, J. S., Compo, G. P., and Thépaut, J.-N.: A Comparison of
Variational and Ensemble-Based Data Assimilation Systems for Reanalysis of
Sparse Observations, Mon. Weather Rev., 137, 1991–1999,
<ext-link xlink:href="http://dx.doi.org/10.1175/2008MWR2781.1" ext-link-type="DOI">10.1175/2008MWR2781.1</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx68"><label>Widmann et al.(2010)</label><mixed-citation>Widmann, M., Goosse, H., van der Schrier, G., Schnur, R., and Barkmeijer, J.:
Using data assimilation to study extratropical Northern Hemisphere climate
over the last millennium, Clim. Past, 6, 627–644,
<ext-link xlink:href="http://dx.doi.org/10.5194/cp-6-627-2010" ext-link-type="DOI">10.5194/cp-6-627-2010</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx69"><label>Woollings et al.(2011)</label><mixed-citation>Woollings, T., Pinto, J. G., and Santos, J. A.: Dynamical Evolution of North
Atlantic Ridges and Poleward Jet Stream Displacements, J. Atmos. Sci., 68,
954–963, <ext-link xlink:href="http://dx.doi.org/10.1175/2011JAS3661.1" ext-link-type="DOI">10.1175/2011JAS3661.1</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx70"><label>Yin and Struik(2009)</label><mixed-citation>Yin, X. and Struik, P.: C3 and C4 photosynthesis models: An overview from the
perspective of crop modelling, NJAS-Wagen. J. Life Sc., 57, 27–38,
<ext-link xlink:href="http://dx.doi.org/10.1016/j.njas.2009.07.001" ext-link-type="DOI">10.1016/j.njas.2009.07.001</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx71"><label>Zadeh(1975)</label><mixed-citation>
Zadeh, L. A.: Fuzzy logic and approximate reasoning, Synthese, 30, 407–428,
1975.</mixed-citation></ref>

  </ref-list><app-group content-type="float"><app><title/>

    </app></app-group></back>
    <!--<article-title-html>Assimilation of pseudo-tree-ring-width observations into an atmospheric general circulation model</article-title-html>
<abstract-html><p class="p">Paleoclimate data assimilation (DA) is a promising technique to
systematically combine the information from climate model simulations and
proxy records. Here, we investigate the assimilation of tree-ring-width (TRW)
chronologies into an atmospheric global climate model using ensemble Kalman
filter (EnKF) techniques and a process-based tree-growth forward model as an
observation operator. Our results, within a perfect-model experiment setting,
indicate that the <q>online DA</q> approach did not outperform the
<q>off-line</q> one, despite its
considerable additional implementation complexity. On the other hand, it was
observed that the nonlinear response of tree growth to surface temperature
and soil moisture does deteriorate the operation of the time-averaged EnKF
methodology. Moreover, for the first time we show that this skill loss
appears significantly sensitive to the structure of the growth rate function,
used to represent the principle of limiting factors (PLF) within the forward
model. In general, our experiments showed that the error reduction achieved
by assimilating pseudo-TRW chronologies is modulated by the magnitude of the
yearly internal variability in the model. This result might help the
dendrochronology community to optimize their sampling efforts.</p></abstract-html>
<ref-html id="bib1.bib1"><label>Acevedo et al.(2015)</label><mixed-citation>
Acevedo, W., Reich, S., and Cubasch, U.: Towards the assimilation of
tree-ring-width records using ensemble Kalman filtering techniques, Clim.
Dynam., 46, 1909–1920, <a href="http://dx.doi.org/10.1007/s00382-015-2683-1" target="_blank">doi:10.1007/s00382-015-2683-1</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>Amezcua et al.(2014)</label><mixed-citation>
Amezcua, J., Ide, K., Kalnay, E., and Reich, S.: Ensemble transform
Kalman-Bucy filters, Q. J.Roy. Meteor. Soc., 140, 995–1004,
<a href="http://dx.doi.org/10.1002/qj.2186" target="_blank">doi:10.1002/qj.2186</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>Annan and Hargreaves(2012)</label><mixed-citation>
Annan, J. D. and Hargreaves, J. C.: Identification of climatic state with
limited proxy data, Clim. Past, 8, 1141–1151, <a href="http://dx.doi.org/10.5194/cp-8-1141-2012" target="_blank">doi:10.5194/cp-8-1141-2012</a>,
2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>Barkmeijer et al.(2003)</label><mixed-citation>
Barkmeijer, J., Iversen, T., and Palmer, T. N.: Forcing singular vectors and
other sensitive model structures, Q. J. Roy. Meteor. Soc., 129, 2401–2423,
<a href="http://dx.doi.org/10.1256/qj.02.126" target="_blank">doi:10.1256/qj.02.126</a>, 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>Bhend et al.(2012)</label><mixed-citation>
Bhend, J., Franke, J., Folini, D., Wild, M., and Brönnimann, S.: An
ensemble-based approach to climate reconstructions, Clim. Past, 8, 963–976,
<a href="http://dx.doi.org/10.5194/cp-8-963-2012" target="_blank">doi:10.5194/cp-8-963-2012</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>Blackman(1905)</label><mixed-citation>
Blackman, F. F.: Optima and limiting factors, Ann. Bot., 19, 281–295, 1905.
</mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>Boucher et al.(2014)</label><mixed-citation>
Boucher, É., Guiot, J., Hatté, C., Daux, V., Danis, P.-A., and
Dussouillez, P.: An inverse modeling approach for tree-ring-based climate
reconstructions under changing atmospheric CO<sub>2</sub> concentrations,
Biogeosciences, 11, 3245–3258, <a href="http://dx.doi.org/10.5194/bg-11-3245-2014" target="_blank">doi:10.5194/bg-11-3245-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>Breitenmoser et al.(2014)</label><mixed-citation>
Breitenmoser, P., Brönnimann, S., and Frank, D.: Forward modelling of
tree-ring width and comparison with a global network of tree-ring
chronologies, Clim. Past, 10, 437–449, <a href="http://dx.doi.org/10.5194/cp-10-437-2014" target="_blank">doi:10.5194/cp-10-437-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>Brönnimann(2011)</label><mixed-citation>
Brönnimann, S.: Towards a paleoreanalysis?, ProClim-Flash, 51, p. 16, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>Burgers et al.(1998)</label><mixed-citation>
Burgers, G., van Leeuwen, P. J., and Evensen, G.: Analysis scheme in the
ensemble Kalman filter, Mon. Weather Rev., 126, 1719–1724,
<a href="http://dx.doi.org/10.1029/94JC00572" target="_blank">doi:10.1029/94JC00572</a>, 1998.
</mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>Crucifix(2012)</label><mixed-citation>
Crucifix, M.: Traditional and novel approaches to palaeoclimate modelling,
Quaternary Sci. Rev., 57, 1–16, <a href="http://dx.doi.org/10.1016/j.quascirev.2012.09.010" target="_blank">doi:10.1016/j.quascirev.2012.09.010</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>Dee et al.(2016)</label><mixed-citation>
Dee, S. G., Steiger, N. J., Emile-Geay, J., and Hakim, G. J.: On the utility
of proxy system models for estimating climate states over the common era,
J. Adv. Model. Earth Syst., 8, 1164–1179, <a href="http://dx.doi.org/10.1002/2016MS000677" target="_blank">doi:10.1002/2016MS000677</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>Deza et al.(2014)Deza, Masoller, and Barreiro</label><mixed-citation>
Deza, J. I., Masoller, C., and Barreiro, M.: Distinguishing the effects of
internal and forced atmospheric variability in climate networks, Nonlin.
Processes Geophys., 21, 617–631, <a href="http://dx.doi.org/10.5194/npg-21-617-2014" target="_blank">doi:10.5194/npg-21-617-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>Dirren and Hakim(2005)</label><mixed-citation>
Dirren, S. and Hakim, G. J.: Toward the assimilation of time-averaged
observations, Geophys. Res. Lett., 32, L04804, <a href="http://dx.doi.org/10.1029/2004GL021444" target="_blank">doi:10.1029/2004GL021444</a>,
2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>Dubinkina and Goosse(2013)</label><mixed-citation>
Dubinkina, S. and Goosse, H.: An assessment of particle filtering methods and
nudging for climate state reconstructions, Clim. Past, 9, 1141–1152,
<a href="http://dx.doi.org/10.5194/cp-9-1141-2013" target="_blank">doi:10.5194/cp-9-1141-2013</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>Dubinkina et al.(2011)</label><mixed-citation>
Dubinkina, S., Goosse, H., Sallaz-Damaz, Y., Crespin, E., and Crucifix, M.:
Testing a particle filter to reconstruction climate over the past centuries,
Int. J. Bifurcat. Chaos, 21, 3611–3618, <a href="http://dx.doi.org/10.1142/S0218127411030763" target="_blank">doi:10.1142/S0218127411030763</a>,
2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib17"><label>Evans et al.(2013)</label><mixed-citation>
Evans, M. N., Tolwinski-Ward, S. E., Thompson, D. M., and Anchukaitis, K. J.:
Applications of proxy system modeling in high resolution paleoclimatology,
Quaternary Sci. Rev., 76, 16–28, <a href="http://dx.doi.org/10.1016/j.quascirev.2013.05.024" target="_blank">doi:10.1016/j.quascirev.2013.05.024</a>,
2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib18"><label>Evensen(1994)</label><mixed-citation>
Evensen, G.: Sequential data assimilation with a nonlinear quasi-geostrophic
model using Monte Carlo methods to forecast error statistics, J. Geophys.
Res., 99, 10143–10162, <a href="http://dx.doi.org/10.1029/94JC00572" target="_blank">doi:10.1029/94JC00572</a>, 1994.
</mixed-citation></ref-html>
<ref-html id="bib1.bib19"><label>Fritts(1976)</label><mixed-citation>
Fritts, H. C.: Tree rings and climate, Academic Press, New York, 1976.
</mixed-citation></ref-html>
<ref-html id="bib1.bib20"><label>Hakim et al.(2013)</label><mixed-citation>
Hakim, G., Annan, J., Broennimann, S., Crucifix, M., Edwards, T., Goosse, H.,
Paul, A., van der Schrier, G., and Widmann, M.: Overview of data assimilation
methods, PAGES news, 21, 2 pp., 2013.

</mixed-citation></ref-html>
<ref-html id="bib1.bib21"><label>Hakim et al.(2016)</label><mixed-citation>
Hakim, G. J., Emile-Geay, J., Steig, E. J., Noone, D., Anderson, D. M.,
Tardif, R., Steiger, N., and Perkins, W. A.: The last millennium climate
reanalysis project: Framework and first results, J. Geophys. Res.-Atmos.,
121, 6745–6764, <a href="http://dx.doi.org/10.1002/2016JD024751" target="_blank">doi:10.1002/2016JD024751</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib22"><label>Hamill(2006)</label><mixed-citation>
Hamill, T. M.: Ensemble-based atmospheric data assimilation, in:
Predictability of Weather and Climate, edited by: Palmer, T. and Hagedorn,
R., Cambridge University Press, <a href="http://dx.doi.org/10.1017/CBO9780511617652.007" target="_blank">doi:10.1017/CBO9780511617652.007</a>, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib23"><label>Harpole et al.(2011)</label><mixed-citation>
Harpole, W. S., Ngai, J. T., Cleland, E. E., Seabloom, E. W., Borer, E. T.,
Bracken, M. E., Elser, J. J., Gruner, D. S., Hillebrand, H., Shurin, J. B.,
and Smith, J. E.: Nutrient co-limitation of primary producer communities,
Ecol. Lett., 14, 852–862, <a href="http://dx.doi.org/10.1111/j.1461-0248.2011.01651.x" target="_blank">doi:10.1111/j.1461-0248.2011.01651.x</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib24"><label>Holton and Hakim(2013)</label><mixed-citation>
Holton, J. and Hakim, G. J.: An Introduction to Dynamic Meteorology, Academic
Press, <a href="http://books.google.de/books?id=hLQRAQAAIAAJ" target="_blank">http://books.google.de/books?id=hLQRAQAAIAAJ</a>, last access:
15 May 2017, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib25"><label>Huang et al.(1996)</label><mixed-citation>
Huang, J., van den Dool, H. M., and Georgarakos, K. P.: Analysis of
Model-Calculated Soil Moisture over the United States (1931–1993) and
Applications to Long-Range Temperature Forecasts, J. Climate, 9, 1350–1362,
<a href="http://dx.doi.org/10.1175/1520-0442(1996)009&lt;1350:AOMCSM&gt;2.0.CO;2" target="_blank">doi:10.1175/1520-0442(1996)009&lt;1350:AOMCSM&gt;2.0.CO;2</a>,
1996.
</mixed-citation></ref-html>
<ref-html id="bib1.bib26"><label>Hughes and Ammann(2009)</label><mixed-citation>
Hughes, M. and Ammann, C.: The future of the past – an earth system
framework for high resolution paleoclimatology: editorial essay, Climatic
Change, 94, 247–259, <a href="http://dx.doi.org/10.1007/s10584-009-9588-0" target="_blank">doi:10.1007/s10584-009-9588-0</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib27"><label>Hughes et al.(2010)</label><mixed-citation>
Hughes, M., Guiot, J., and Ammann, C.: An emerging paradigm: Process-based
climate reconstructions, PAGES news, 18, 87–89, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib28"><label>Hunt et al.(2007)</label><mixed-citation>
Hunt, B. R., Kostelich, E. J., and Szunyogh, I.: Efficient data assimilation
for spatiotemporal chaos: A local ensemble transform Kalman filter,
Physica D, 230, 112–126, <a href="http://dx.doi.org/10.1016/j.physd.2006.11.008" target="_blank">doi:10.1016/j.physd.2006.11.008</a>, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib29"><label>Huntley and Hakim(2010)</label><mixed-citation>
Huntley, H. and Hakim, G.: Assimilation of time-averaged observations in a
quasi-geostrophic atmospheric jet model, Clim. Dynam., 35, 995–1009,
<a href="http://dx.doi.org/10.1007/s00382-009-0714-5" target="_blank">doi:10.1007/s00382-009-0714-5</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib30"><label>Kalman(1960)</label><mixed-citation>
Kalman, R. E.: A New Approach to Linear Filtering and Prediction Problems,
J. Basic Eng.-T. ASME, 82, 35–45, 1960.
</mixed-citation></ref-html>
<ref-html id="bib1.bib31"><label>Kalnay(2003)</label><mixed-citation>
Kalnay, E.: Atmospheric modeling, data assimilation, and predictability,
Cambridge University Press, 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib32"><label>Kurahashi-Nakamura et al.(2014)</label><mixed-citation>
Kurahashi-Nakamura, T., Losch, M., and Paul, A.: Can sparse proxy data
constrain the strength of the Atlantic meridional overturning circulation?,
Geosci. Model Dev., 7, 419–432, <a href="http://dx.doi.org/10.5194/gmd-7-419-2014" target="_blank">doi:10.5194/gmd-7-419-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib33"><label>Lahoz et al.(2010)</label><mixed-citation>
Lahoz, W., Khattatov, B., and Menard, R.: Data Assimilation: Making Sense of
Observations, Springer, <a href="http://books.google.de/books?id=KivkFpthm1EC" target="_blank">http://books.google.de/books?id=KivkFpthm1EC</a>,
last access: 15 May 2017, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib34"><label>Li et al.(2009)h</label><mixed-citation>
Li, H., Kalnay, E., Miyoshi, T., and Danforth, C. M.: Accounting for Model
Errors in Ensemble Data Assimilation, Mon. Weather Rev., 137, 3407–3419,
<a href="http://dx.doi.org/10.1175/2009MWR2766.1" target="_blank">doi:10.1175/2009MWR2766.1</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib35"><label>Lien et al.(2013)Lien, Kalnay, and Miyoshi</label><mixed-citation>
Lien, G.-Y., Kalnay, E., and Miyoshi, T.: Effective assimilation of global
precipitation: simulation experiments, Tellus A, 65, 19915,
<a href="http://dx.doi.org/10.3402/tellusa.v65i0.19915" target="_blank">doi:10.3402/tellusa.v65i0.19915</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib36"><label>Lorenc(1986)</label><mixed-citation>
Lorenc, A. C.: Analysis methods for numerical weather prediction, Q. J.Roy.
Meteor. Soc., 112, 1177–1194, <a href="http://dx.doi.org/10.1002/qj.49711247414" target="_blank">doi:10.1002/qj.49711247414</a>, 1986.
</mixed-citation></ref-html>
<ref-html id="bib1.bib37"><label>Lorenz(1996)</label><mixed-citation>
Lorenz, E. N.: Predictability, a problem partly solved, in: Proceedings of
ECMWF Seminar on predictability, ECMWF, Reading, UK, 4–8 September 1995,
1–19, 1996.
</mixed-citation></ref-html>
<ref-html id="bib1.bib38"><label>Luhandjula and Gupta(1996)</label><mixed-citation>
Luhandjula, M K.. and Gupta, M. M.: On fuzzy stochastic optimization, Fuzzy
Set. Syst., 81, 47–55, <a href="http://dx.doi.org/10.1016/0165-0114(95)00240-5" target="_blank">doi:10.1016/0165-0114(95)00240-5</a>, 1996.
</mixed-citation></ref-html>
<ref-html id="bib1.bib39"><label>Marchini(2011)</label><mixed-citation>
Marchini, A.: Modelling Ecological Processes with Fuzzy Logic Approaches, in:
Modelling Complex Ecological Dynamics, edited by: Jopp, F., Reuter, H., and
Breckling, B., Springer Berlin Heidelberg, 133–145, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib40"><label>Mathiot et al.(2013)</label><mixed-citation>
Mathiot, P., Goosse, H., Crosta, X., Stenni, B., Braida, M., Renssen, H., Van
Meerbeeck, C. J., Masson-Delmotte, V., Mairesse, A., and Dubinkina, S.: Using
data assimilation to investigate the causes of Southern Hemisphere high
latitude cooling from 10 to 8 ka BP, Clim. Past, 9, 887–901,
<a href="http://dx.doi.org/10.5194/cp-9-887-2013" target="_blank">doi:10.5194/cp-9-887-2013</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib41"><label>Matsikaris et al.(2015)</label><mixed-citation>
Matsikaris, A., Widmann, M., and Jungclaus, J.: On-line and off-line data
assimilation in palaeoclimatology: a case study, Clim. Past, 11, 81–93,
<a href="http://dx.doi.org/10.5194/cp-11-81-2015" target="_blank">doi:10.5194/cp-11-81-2015</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib42"><label>Miyoshi(2005)</label><mixed-citation>
Miyoshi, T.: Ensemble Kalman filter experiments with a primitive-equation
global model, PhD thesis, University of Maryland, College Park, 197 pp.,
2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib43"><label>Miyoshi(2010)</label><mixed-citation>
Miyoshi, T.: The Gaussian Approach to Adaptive Covariance Inflation and Its
Implementation with the Local Ensemble Transform Kalman Filter, Mon. Weather
Rev., 139, 1519–1535, <a href="http://dx.doi.org/10.1175/2010MWR3570.1" target="_blank">doi:10.1175/2010MWR3570.1</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib44"><label>Molteni(2003)</label><mixed-citation>
Molteni, F.: Atmospheric simulations using a GCM with simplified physical
parametrizations. I: model climatology and variability in multi-decadal
experiments, Clim. Dynam., 20, 175–191, 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib45"><label>Nguyen et al.(2002)</label><mixed-citation>
Nguyen, H. T., Prasad, N. R., Walker, C. L., and Walker, E. A.: A First
Course in Fuzzy and Neural Control, 1 Edn., Chapman and Hall/CRC, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib46"><label>Niinemets and Kull(2005)</label><mixed-citation>
Niinemets, Ü. and Kull, K.: Co-limitation of plant primary productivity
by nitrogen and phosphorus in a species-rich wooded meadow on calcareous
soils, Acta Oecol., 28, 345–356, <a href="http://dx.doi.org/10.1016/j.actao.2005.06.003" target="_blank">doi:10.1016/j.actao.2005.06.003</a>, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib47"><label>Paul and Schäfer-Neth(2005)</label><mixed-citation>
Paul, A. and Schäfer-Neth, C.: How to combine sparse proxy data and coupled
climate models, Quaternary Sci. Rev., 24, 1095–1107,
<a href="http://dx.doi.org/10.1016/j.quascirev.2004.05.010" target="_blank">doi:10.1016/j.quascirev.2004.05.010</a>, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib48"><label>Pendergrass et al.(2012)</label><mixed-citation>
Pendergrass, A., Hakim, G., Battisti, D., and Roe, G.: Coupled Air-Mixed
Layer Temperature Predictability for Climate Reconstruction, J. Climate, 25,
459–472, <a href="http://dx.doi.org/10.1175/2011JCLI4094.1" target="_blank">doi:10.1175/2011JCLI4094.1</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib49"><label>Reich and Cotter(2015)</label><mixed-citation>
Reich, S. and Cotter, C.: Probabilistic Forecasting and Bayesian Data
Assimilation, in: Cambridge Texts in Applied Mathematics, Cambridge
University Press, <a href="https://books.google.de/books?id=xVpiCAAAQBAJ" target="_blank">https://books.google.de/books?id=xVpiCAAAQBAJ</a>, last
access: 1 May 2017, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib50"><label>Ruiz et al.(2013)</label><mixed-citation>
Ruiz, J. J., Pulido, M., and Miyoshi, T.: Estimating Model Parameters with
Ensemble-Based Data Assimilation: A Review, J. Meteorol. Soc. Jpn., Ser. II,
91, 79–99, <a href="http://dx.doi.org/10.2151/jmsj.2013-201" target="_blank">doi:10.2151/jmsj.2013-201</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib51"><label>Saito et al.(2008)Saito, Goepfert, and Ritt</label><mixed-citation>
Saito, M. A., Goepfert, T. J., and Ritt, J. T.: Some thoughts on the concept
of colimitation: three definitions and the importance of bioavailability,
Limnol. Oceanogr., 53, 276–290, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib52"><label>Salski(2006)</label><mixed-citation>
Salski, A.: Ecological Applications of Fuzzy Logic, in: Ecological
Informatics, edited by: Recknagel, F., Springer Berlin Heidelberg, 3–14,
2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib53"><label>Se(2009)</label><mixed-citation>
Se, Z.: Fuzzy Logic and Hydrological Modeling, CRC Press, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib54"><label>Singh and Lal(1935)</label><mixed-citation>
Singh, B. N. and Lal, K. N.: Limitations of Blackman's law of limiting
factors and Harder's concept of relative minimum as applied to
photosynthesis, Plant Physiol., 10, 245–268, 1935.
</mixed-citation></ref-html>
<ref-html id="bib1.bib55"><label>Smith et al.(2012)</label><mixed-citation>
Smith, D. M., Scaife, A. A., and Kirtman, B. P.: What is the current state of
scientific knowledge with regard to seasonal and decadal forecasting?,
Environ. Res. Lett., 7, 015602, <a href="http://dx.doi.org/10.1088/1748-9326/7/1/015602" target="_blank">doi:10.1088/1748-9326/7/1/015602</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib56"><label>Steiger et al.(2014)</label><mixed-citation>
Steiger, N., Hakim, G., Steig, E., Battisti, D., and Roe, G.: Assimilation of
Time-Averaged Pseudoproxies for Climate Reconstruction, J. Climate, 27,
426–441, <a href="http://dx.doi.org/10.1175/JCLI-D-12-00693.1" target="_blank">doi:10.1175/JCLI-D-12-00693.1</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib57"><label>Talagrand(1997)</label><mixed-citation>
Talagrand, O.: Assimilation of observations, an introduction,
Journal-Meteorological Society of Japan Series 2, 75, 81–99, 1997.
</mixed-citation></ref-html>
<ref-html id="bib1.bib58"><label>Thompson and Wallace(2000)</label><mixed-citation>
Thompson, D. W. J. and Wallace, J. M.: Annular Modes in the Extratropical
Circulation. Part I: Month-to-Month Variability, J. Climate, 13, 1000–1016,
<a href="http://dx.doi.org/10.1175/1520-0442(2000)013&lt;1000:AMITEC&gt;2.0.CO;2" target="_blank">doi:10.1175/1520-0442(2000)013&lt;1000:AMITEC&gt;2.0.CO;2</a>,
2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib59"><label>Tippett et al.(2003)</label><mixed-citation>
Tippett, M. K., Anderson, J. L., Bishop, C. H., Hamill, T. M., and Whitaker,
J. S.: Ensemble Square Root Filters*, Mon. Weather Rev., 131, 1485–1490,
<a href="http://dx.doi.org/10.1175/1520-0493(2003)131&lt;1485:ESRF&gt;2.0.CO;2" target="_blank">doi:10.1175/1520-0493(2003)131&lt;1485:ESRF&gt;2.0.CO;2</a>, 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib60"><label>Tolwinski-Ward(2012)</label><mixed-citation>
Tolwinski-Ward, S. E.: Inference on Tree-Ring Width and Paleoclimate Using a
Proxy Model of Intermediate Complexity, PhD thesis, The University of
Arizona, <a href="http://hdl.handle.net/10150/241975" target="_blank">http://hdl.handle.net/10150/241975</a>, last access: 22 May 2017,
2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib61"><label>Tolwinski-Ward et al.(2014)</label><mixed-citation>
Tolwinski-Ward, S. E, Tingley, M., Evans, M., Hughes, M., and Nychka, D.:
Probabilistic reconstructions of local temperature and soil moisture from
tree-ring data with potentially time-varying climatic response, Clim. Dynam.,
44, 791–806, <a href="http://dx.doi.org/10.1007/s00382-014-2139-z" target="_blank">doi:10.1007/s00382-014-2139-z</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib62"><label>Tolwinski-Ward et al.(2011)</label><mixed-citation>
Tolwinski-Ward, S. E., Evans, M. N., Hughes, M., and Anchukaitis, K. J.: An
efficient forward model of the climate controls on interannual variation in
tree-ring width, Clim. Dynam., 36, 2419–2439,
<a href="http://dx.doi.org/10.1007/s00382-010-0945-5" target="_blank">doi:10.1007/s00382-010-0945-5</a>, 2011.

</mixed-citation></ref-html>
<ref-html id="bib1.bib63"><label>Vaganov et al.(2006)</label><mixed-citation>
Vaganov, E., Hughes, M., and Shashkin, A.: Growth Dynamics of Conifer Tree
Rings: Images of Past and Future Environments, in: Ecological studies,
Springer, New York, 183, 358 pp., <a href="http://dx.doi.org/10.1007/3-540-31298-6" target="_blank">doi:10.1007/3-540-31298-6</a>, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib64"><label>van der Schrier and Barkmeijer(2005)</label><mixed-citation>
van der Schrier, G. and Barkmeijer, J.: Bjerknes' hypothesis on the coldness
during AD 1790–1820 revisited, Clim. Dynam., 25, 537–553,
<a href="http://dx.doi.org/10.1007/s00382-005-0053-0" target="_blank">doi:10.1007/s00382-005-0053-0</a>, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib65"><label>Van Leeuwen et al.(2015)</label><mixed-citation>
Van Leeuwen, P. J., Cheng, Y., and Reich, S.: Nonlinear data assimilation,
Springer, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib66"><label>von Storch et al.(2000)</label><mixed-citation>
von Storch, H., Cubasch, U., González-Ruoco, J., Jones, J., Widmann, M.,
and Zorita, E.: Combining paleoclimatic evidence and GCMs by means of data
assimilation through upscaling and nudging (datun), in: Proceedings of the
11th Symposium on Global Change Studies, AMS, Long Beach, CA, USA,
9–14 January 2000, 28–31, 2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib67"><label>Whitaker et al.(2009)</label><mixed-citation>
Whitaker, J. S., Compo, G. P., and Thépaut, J.-N.: A Comparison of
Variational and Ensemble-Based Data Assimilation Systems for Reanalysis of
Sparse Observations, Mon. Weather Rev., 137, 1991–1999,
<a href="http://dx.doi.org/10.1175/2008MWR2781.1" target="_blank">doi:10.1175/2008MWR2781.1</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib68"><label>Widmann et al.(2010)</label><mixed-citation>
Widmann, M., Goosse, H., van der Schrier, G., Schnur, R., and Barkmeijer, J.:
Using data assimilation to study extratropical Northern Hemisphere climate
over the last millennium, Clim. Past, 6, 627–644,
<a href="http://dx.doi.org/10.5194/cp-6-627-2010" target="_blank">doi:10.5194/cp-6-627-2010</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib69"><label>Woollings et al.(2011)</label><mixed-citation>
Woollings, T., Pinto, J. G., and Santos, J. A.: Dynamical Evolution of North
Atlantic Ridges and Poleward Jet Stream Displacements, J. Atmos. Sci., 68,
954–963, <a href="http://dx.doi.org/10.1175/2011JAS3661.1" target="_blank">doi:10.1175/2011JAS3661.1</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib70"><label>Yin and Struik(2009)</label><mixed-citation>
Yin, X. and Struik, P.: C3 and C4 photosynthesis models: An overview from the
perspective of crop modelling, NJAS-Wagen. J. Life Sc., 57, 27–38,
<a href="http://dx.doi.org/10.1016/j.njas.2009.07.001" target="_blank">doi:10.1016/j.njas.2009.07.001</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib71"><label>Zadeh(1975)</label><mixed-citation>
Zadeh, L. A.: Fuzzy logic and approximate reasoning, Synthese, 30, 407–428,
1975.
</mixed-citation></ref-html>--></article>
